Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq1186 381 9e-101 seq681 168 1e-36 >seq1186 Length=9024 Score = 381 bits (422), Expect = 9e-101 Identities = 364/463 (79%), Gaps = 2/463 (0%) Strand=Plus/Minus Query 215825 ATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCA 215884 |||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| || Sbjct 5898 ATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 5839 Query 215885 ATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAG 215944 |||||||||||| | || || |||||| ||||| | || |||||||| | ||||| Sbjct 5838 ATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCT 5779 Query 215945 AACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGT 216004 ||| |||||||||||||| ||||| || ||||| |||||||||||||||||||||||| Sbjct 5778 AACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 5719 Query 216005 TACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTC 216064 ||||||||||| | |||||||||||||| || ||||||||||| | | |||||| Sbjct 5718 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTC 5659 Query 216065 TTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATG 216124 ||| | || || | || ||| | ||||| ||| || || | ||| | ||||||||| Sbjct 5658 TTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTATG 5599 Query 216125 GCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTT 216184 || |||||| | ||||| ||||||||||||||||| || |||||| | ||| || Sbjct 5598 GCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTGTA 5539 Query 216185 ATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTT-GGTATGGAAGTAATGCACGA 216243 | |||||||| ||| | | ||| | || |||| |||||||| |||||||| || Sbjct 5538 TTAAACACTTGGGCTGACATCATCAACCGTGC-TAACTTAGGTATGGAGGTAATGCATGA 5480 Query 216244 GCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 |||||||||||||||||||| ||||||| ||| ||| |||| Sbjct 5479 ACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAA 5437 Score = 268 bits (296), Expect = 1e-66 Identities = 281/367 (77%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || || |||||| | ||||||||||| || ||| | ||| | |||||||| ||||| || Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||| || | ||||||| || |||||| | |||||||||||||| ||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCT 8703 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 ||||| || ||||| || ||| | ||||||||| ||||||| ||| | || ||||||||| Sbjct 8702 CCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAAC 8643 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 |||||| ||||||||||| | |||| || ||||| ||||| |||||||||||||| || Sbjct 8642 ATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATT 8583 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 ||||||||||| | ||||||| ||| | ||||| ||||| |||| |||| | | | Sbjct 8582 TGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 8523 Query 215594 TTCCACTTCCTCATTGGTAT-TTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAG 215652 | ||||||| || | ||||| | ||| ||| || | |||||||| | |||| | | Sbjct 8522 TGCCACTTCTTCTTAGGTATCTGCTG-TTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 215653 ATTAGGT 215659 |||||| Sbjct 8463 TTTAGGT 8457 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 215660 ATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTC 215719 ||| | || |||||| |||||||||||| || || ||| ||||||| ||| |||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 215720 CTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCC 215763 | | || || ||||||| |||||||||||||| | |||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCC 8066 >seq681 Length=27805 Score = 168 bits (186), Expect = 1e-36 Identities = 143/176 (81%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 215823 TGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTG 215882 || ||| | | ||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 215883 CAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTC 215942 || ||||||||||| | || || |||||| ||||| | || |||||||| | ||||| Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 215943 AGAACTACGGTTACAAGTTCGGACAAGAGGA----GGAAACATACAACATCGTAGC 215994 ||| |||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745058008853840