Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1134 488 7e-133 seq1186 381 7e-101 seq681 127 3e-24 >seq1134 Length=9887 Score = 488 bits (540), Expect = 7e-133 Identities = 725/1023 (71%), Gaps = 4/1023 (0%) Strand=Plus/Minus Query 183178 TGGTTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCT 183237 |||||||||| | ||||||||| | | || || || || || || || ||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 183238 GGACTCCTACTTCTTCCCAC-TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGC 183296 || | || || |||||| |||||| |||| | || |||||| | ||||| ||| | Sbjct 7876 GGTTTATTA-TTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 183297 TTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTT 183356 |||||||| ||||| || ||||| | || |||| || | |||||| |||||| Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 183357 TCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTG 183416 | || |||||||| || || |||||| || |||||| || || ||||| || | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 183417 GGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTT 183476 ||||||||| | ||||| || || ||| |||| |||||| || || | ||| ||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 183477 TGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 183536 || || | |||||||| |||| | | || ||||||||| | || || |||||| |||| Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 183537 TCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT 183596 || | | | ||||||||||| || || || ||||| | || ||| |||| || Sbjct 7577 GCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATT 7518 Query 183597 TGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTT 183656 || ||||||| | || || || | ||||| || |||||||| ||||| ||||| Sbjct 7517 CGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTT 7458 Query 183657 CGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTT 183716 || || ||||||||||| | || | | ||| | |||||||||||||||||||| | Sbjct 7457 TGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCT 7398 Query 183717 AAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTAT 183776 ||||| ||||| |||||||| ||||||||| | |||| | || || | |||| || Sbjct 7397 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAAT 7338 Query 183777 CCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAA 183836 || |||| || ||||| || ||||| | |||||||| || || ||||| ||| Sbjct 7337 TCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCG 7278 Query 183837 GGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTG 183896 || || | | || |||| ||||| || || || ||||| || || || | ||||| Sbjct 7277 TGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTG 7218 Query 183897 GTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTT 183956 |||||| || ||||| || || ||| || || || ||||| |||||||| ||| | || Sbjct 7217 GTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATT 7158 Query 183957 TGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCT 184016 || || || | ||||||||| | | | ||||| | ||||| | ||| | || || Sbjct 7157 CGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCT 7098 Query 184017 TCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 184076 | || ||||||||||| ||| || ||| |||| || |||||||| || ||||| || Sbjct 7097 AAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAAC 7038 Query 184077 GTTCTACACAAAGAACATACTTCTT-AATGAAGGACTACGTGCATGGTTAGCACCTTCTG 184135 ||||| ||||| || || ||| || |||||||| | ||||| ||| | || || | Sbjct 7037 ATTCTATACAAAAAATAT-CTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAG 6979 Query 184136 ATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTT 184195 | |||||||| || ||| |||| || || || ||||||||| | || || ||||||| Sbjct 6978 ACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTTT 6919 Query 184196 GAT 184198 || Sbjct 6918 AAT 6916 >seq1186 Length=9024 Score = 381 bits (422), Expect = 7e-101 Identities = 365/466 (78%), Gaps = 1/466 (0%) Strand=Plus/Minus Query 182321 TCTTA-TGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTA 182379 ||||| |||| || ||||||||||| ||||| || |||||||| ||||||||| | || Sbjct 5903 TCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCT 5844 Query 182380 GTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGT 182439 || ||||||||||| || || || ||||| | ||||||| || ||||| | || | Sbjct 5843 CAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAAT 5784 Query 182440 CACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCC 182499 || ||| ||||||||||||||||||||||||||| || || |||||||| || || | Sbjct 5783 CAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCAC 5724 Query 182500 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGC 182559 | || ||||| |||||||| |||||||||||||| |||||||||||||| ||||| || | Sbjct 5723 ACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTAC 5664 Query 182560 ACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCA 182619 |||||||| | ||||| ||||| ||||| | || ||||| || || | ||| | || | Sbjct 5663 ACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAA 5604 Query 182620 CGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 182679 | ||||| |||||| | ||||| ||||||||||||||||| | | || ||| |||| Sbjct 5603 CTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTC 5544 Query 182680 GTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGC 182739 |||| | ||||||||||| || | | ||||||||| | |||||||| || |||| Sbjct 5543 GTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGC 5484 Query 182740 ATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGA 182785 |||| |||||||| ||||||||||| ||||| | ||| ||| ||| Sbjct 5483 ATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 286 bits (316), Expect = 4e-72 Identities = 285/367 (78%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||||||||| | || ||||| | || ||| | || |||||||||| ||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| ||||| || | || || ||||| |||||| | || ||| | || || || Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 |||||| || ||||| |||||||| || || || |||||||| | | || |||||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 ||||||| ||||||||||| |||| | || ||||| || ||| | |||||||||||||| Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 |||||||| || || ||||| |||||| | || ||||||||||||| |||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 182093 TTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACTTTCTTACCG 182152 || ||||||| | | || |||| | |||||||| |||||||||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 182153 CTTAGGT 182159 |||||| Sbjct 8463 TTTAGGT 8457 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 182160 ATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 182219 |||||||| |||||| ||| || |||||||||||||| ||||| ||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 182220 TTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCC 182263 | |||| ||| ||||||||||||| ||||| || | ||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCC 8066 >seq681 Length=27805 Score = 127 bits (140), Expect = 3e-24 Identities = 128/166 (77%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 182334 TTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGT 182393 ||||||||||| ||||| || ||||| |||||||||||| | || |||| |||||||| Sbjct 3253 TTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACGGT 3194 Query 182394 TCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGT 182453 || || || || ||||| | ||||||| || ||||| | || ||| ||| |||| Sbjct 3193 TCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTGGT 3134 Query 182454 TACAAGTTCGGTCAAGAAGA----AGAGACCTATAACATCGTTGCA 182495 ||||||||||||||||| || ||| || || |||||||| ||| Sbjct 3133 TACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611676632175400