Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1134 549 2e-151 seq1186 302 5e-77 seq681 82.4 9e-11 >seq1134 Length=9887 Score = 549 bits (608), Expect = 2e-151 Identities = 736/1021 (72%), Gaps = 2/1021 (0%) Strand=Plus/Minus Query 166158 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 166217 |||||||||| | || |||||| | | ||| |||||||| || || |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 166218 GGACTTCTTCTTCTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTAC 166276 || || || || |||||| |||||| |||| | || |||||| | ||||| || || Sbjct 7876 GGT-TTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 166277 TTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTT 166336 || || || ||||| || ||||| | |||| ||| | || ||| ||||| Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 166337 TCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTG 166396 | || || || ||||| ||||| || | |||||| || || || ||| || | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 166397 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTT 166456 ||||||||| || ||||| ||||| | |||| |||||| || || | ||| | || Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 166457 TGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGC 166516 || ||| | |||||||| |||| |||| ||||||||| | || || |||||||| || Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 166517 TCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTT 166576 ||| ||| | ||||| ||||| ||||||||||| || | || ||| |||| || Sbjct 7577 GCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATT 7518 Query 166577 CGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 166636 ||| ||| || | || |||||| | |||||||| ||||||| ||||| ||| ||| Sbjct 7517 CGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTT 7458 Query 166637 CGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACT 166696 || || ||||||||||||| || | || ||| | || || |||||||||||||| || Sbjct 7457 TGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCT 7398 Query 166697 GAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCAT 166756 |||||||| || ||||||||||| || ||| || | |||| ||| || | | ||| || Sbjct 7397 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAAT 7338 Query 166757 CCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAA 166816 || |||| || ||||| ||||| | | |||||||||| || || |||||| Sbjct 7337 TCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCG 7278 Query 166817 GGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTG 166876 || ||| || | || |||| |||||||| || |||||||| || || ||| | | || Sbjct 7277 TGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTG 7218 Query 166877 GTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTT 166936 ||| ||||| |||||| | || ||| ||| || | ||||| || ||||| ||||| || Sbjct 7217 GTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATT 7158 Query 166937 TGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 166996 || || |||| ||||| |||| ||| | || || | ||||| | ||| | ||||| Sbjct 7157 CGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCT 7098 Query 166997 TCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAAC 167056 | || ||||| |||||||| || ||| | | || || || ||||||||||||||||| Sbjct 7097 AAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAAC 7038 Query 167057 CTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGA 167116 |||||||| || || || | || ||||| ||||| ||| | |||||||| || || Sbjct 7037 ATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGA 6978 Query 167117 TCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTA 167176 ||||| || || |||| |||||||||||||| || | ||| | ||||||||||| || Sbjct 6977 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTTTA 6918 Query 167177 A 167177 | Sbjct 6917 A 6917 >seq1186 Length=9024 Score = 302 bits (334), Expect = 5e-77 Identities = 352/467 (75%), Gaps = 11/467 (2%) Strand=Plus/Minus Query 165291 TCTTA-TGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCT 165349 ||||| |||| || ||||||||| | || |||||||| ||||| ||||| || | |||| Sbjct 5903 TCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCT 5844 Query 165350 CTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGA 165409 | |||||||| || | || ||||| || | |||| || |||||||||| || Sbjct 5843 CAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAA- 5785 Query 165410 GTCAG--AACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGC 165467 |||| ||| ||||| ||||| || ||||||||||| || || |||||||| ||||| Sbjct 5784 -TCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGC 5726 Query 165468 CCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCT 165527 ||||| ||||| |||||| | || ||||||||||| || |||||||| || ||||| | Sbjct 5725 ACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATT 5666 Query 165528 GCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAG 165587 ||||||||| | || || ||||| || || |||| ||||| || ||| | ||| ||| Sbjct 5665 ACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGT-TTAT 5607 Query 165588 CACC-ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCA-- 165644 || | ||||| |||||| | ||||| ||||||||||||||||| |||| || ||| Sbjct 5606 CAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAG 5547 Query 165645 GAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGT 165704 | || | | |||||||||||| | | ||||||||| | |||||||| || Sbjct 5546 GTCGTGTATTAAAC--ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGT 5489 Query 165705 TATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGCTG 165751 |||||||| |||||||||||||||||||| || ||| | ||| ||| Sbjct 5488 AATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTG 5442 Score = 268 bits (296), Expect = 1e-66 Identities = 280/363 (77%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 ||| ||||||||| | ||||| || | |||||| | || ||||||||||||||||| | Sbjct 8823 TTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTAT 8764 Query 164823 TATGATCCC--CTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCATCGCTGC 164879 |||||||| || ||| | | ||||| | ||| || || | |||||||||||||| Sbjct 8763 CATGATCCCTACTCTTT--TAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGC 8707 Query 164880 TCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAA 164939 ||| ||||| ||||| |||||||| ||||| || || | ||||| || | |||||||| Sbjct 8706 TCCTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAA 8647 Query 164940 CAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCC 164999 |||||||||| |||||||||| | || | |||||||| ||||| | |||||||| || Sbjct 8646 CAACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCC 8587 Query 165000 TATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGT 165059 ||||||||||| || | | || || ||||| |||||||||||||||||||| || | Sbjct 8586 AATTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAAT 8527 Query 165060 TGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTA 165119 || | ||||||| || | ||| | || |||||||| |||||||||||| | |||| Sbjct 8526 CGTTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTT 8467 Query 165120 CCG 165122 ||| Sbjct 8466 CCG 8464 >seq681 Length=27805 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/170 (72%), Gaps = 10/170 (6%) Strand=Plus/Minus Query 165302 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 165361 ||||||||||| | || |||||||| || |||||||| || | |||||||| |||| | Sbjct 3255 CGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACG 3196 Query 165362 GAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGA-AACAGAGAGTCAG--AACT 165418 | | || ||||| || | |||| || |||||||| ||| || |||| ||| Sbjct 3195 GTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAAC---GAATCAGCTAACG 3139 Query 165419 ACGGTTATAAGTTTGGACAAGAAGA----AGAGACCTATAACATCGTCGC 165464 ||||| ||||| || ||||| || ||| || || |||||||| || Sbjct 3138 CTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563642953089920