Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq1186 298 6e-76 seq681 129 7e-25 >seq1186 Length=9024 Score = 298 bits (330), Expect = 6e-76 Identities = 349/469 (74%), Gaps = 7/469 (1%) Strand=Plus/Minus Query 170217 TCTTA-TGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCT 170275 ||||| ||||||||||||| ||| ||| ||||||||| | || || || || | |||| Sbjct 5903 TCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCT 5844 Query 170276 CAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGT 170335 |||| |||||||||||| | ||||| |||||| ||||| | || ||||| || ||||| | Sbjct 5843 CAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAAT 5784 Query 170336 CACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCAC 170395 || ||| ||| ||||| ||||| |||||||||||||| |||||||| || || |||| Sbjct 5783 CAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCAC 5724 Query 170396 ATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTC 170455 | || ||||||||| | | ||||||||||| ||| || ||||| |||| | | Sbjct 5723 ACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTAC 5664 Query 170456 ACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCA 170515 |||||||| | ||| | | || || ||||| || ||||| || | | ||| | | | Sbjct 5663 ACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAA 5604 Query 170516 CAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCT---G 170572 | ||||| || ||| | || || || ||||||||||||||| | ||||| ||| | Sbjct 5603 CTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGA---CTCTCAAG 5547 Query 170573 GTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAA 170632 || ||| | || ||||| ||| | | ||| | || ||| |||||||||| |||| Sbjct 5546 GTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAA 5487 Query 170633 TGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCAACTGCTGA 170681 ||||||| ||||| || ||||||||||| || ||||| || ||| ||| Sbjct 5486 TGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 241 bits (266), Expect = 2e-58 Identities = 250/325 (77%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 169732 GGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTT 169791 |||||||||||||| | |||||||| ||| ||| |||| | | || ||| | Sbjct 8780 GGTTGGTTCGGTGTTATCATGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATC 8721 Query 169792 GCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCA 169851 || |||||||| ||||| ||||| ||||||||||| ||| | || || || | |||||| Sbjct 8720 GCATTCATCGCTGCTCCTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCA 8661 Query 169852 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 169911 || | || ||||||||||||||| ||||||| ||| | || | || ||||| |||||| Sbjct 8660 TTATTATACGGTAACAACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGT 8601 Query 169912 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGT 169971 | |||||||| || |||||||||||||| |||| || |||||||| || ||||||||| Sbjct 8600 TTACACTTCTACCCAATTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGT 8541 Query 169972 CCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCT-CTGCCTACATGGGTAGACA 170030 ||||| |||||| | | | ||||||| | | || |||| ||| |||||||| | | Sbjct 8540 CCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATCTGCTG-TTACATGGGCCGTGA 8482 Query 170031 GTGGGAACTATCATACCGTTTAGGT 170055 ||||||| |||| | |||||||||| Sbjct 8481 GTGGGAATTATCTTTCCGTTTAGGT 8457 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTC 170115 |||||||| |||||| ||| || || ||||||||||| | || ||| ||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 170116 TTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTA 170167 | | || ||| ||||||| || |||||||| ||||| |||||| |||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 129 bits (142), Expect = 7e-25 Identities = 133/174 (76%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 170222 TGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAA 170281 ||| | | ||||| ||| ||| ||||||||| | ||||| || || | ||||| ||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 170282 TGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGA 170341 ||||||||||| | ||||| |||||| ||||| | || ||||| |||||||| ||| | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 170342 ACTATGGATACAAATTCGGACAAGAAGA----AGAAACATACAACATTGTTGCA 170391 || ||| ||||| ||||| ||||| || |||||| |||||||| || ||| Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582829545575200