Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1186 318 7e-82 seq681 134 2e-26 >seq1186 Length=9024 Score = 318 bits (352), Expect = 7e-82 Identities = 342/450 (76%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || ||||||||||| ||||| || |||||||| | ||||| || | Sbjct 5459 GGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATACCTAAGTTAGCACGGTTGATG 5518 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | || ||||| || || | ||||| ||| || |||| ||| |||||||| Sbjct 5519 ATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCTACAACTGACTGGTTGAAGTTG 5578 Query 84105 AATCCATTCAGATTAAATGCCAT-GGTGCTAACACCCAGAGCAGCAAACCAAATGCCAAC 84163 || || || | || || ||||| | || ||| ||| | ||| | ||||||||| | || Sbjct 5579 AACCCGTTTAAGTTGAAAGCCATAGTTGATAA-ACCTAAAGCTGTAAACCAAATACATAC 5637 Query 84164 CACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTG 84223 |||||||||||||| ||||| ||||| | |||||| |||||||| ||||| || || Sbjct 5638 AACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTG 5697 Query 84224 GAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTG 84283 |||||| | |||||| ||||| ||||| ||||| || || || |||||||| |||||||| Sbjct 5698 GAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTG 5757 Query 84284 ACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGA 84343 |||||||||||||||| ||| ||| | ||||| || ||||| ||||||| |||||| Sbjct 5758 ACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTTGTTTCACGGATTAAAGAAGA 5817 Query 84344 AGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 ||| || | |||||| ||||| || ||||||| | ||||| |||||||||||||| || Sbjct 5818 AGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACACCAGCAACACC 5877 Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTT 84433 |||||||| || || ||||| | ||| || Sbjct 5878 TAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 212 bits (234), Expect = 7e-50 Identities = 271/369 (73%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 84590 ACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAA--GCAAATGCACCAATCAGG 84647 ||| | ||| | || | |||||| ||||| ||||||||| ||| || ||| | | | Sbjct 8457 ACCTAAACGGAAAGATAATTCCCACTCACGGCCCATGTAACAGCAGAT--ACCTAAGAAG 8514 Query 84648 AAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCT 84707 ||||| | || | | ||| ||||| ||||| || |||| ||| ||||| | | ||| Sbjct 8515 AAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCT 8574 Query 84708 GCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCA 84767 ||||||||||| || ||||| |||| ||| || || ||||| | || | || |||||| Sbjct 8575 GCTTCCCAAATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCA 8634 Query 84768 GAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATA 84827 | ||||||||||| ||||| | | ||||||| ||||||||||||||||| || || Sbjct 8635 GTGATGATGTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATG 8694 Query 84828 TCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGT 84886 ||||| || || ||| | | |||||| |||||||| ||||| ||| || | | ||||| Sbjct 8695 TCAACAGGAGGAGCAGCGATGAATGCGATGATGAATACAGA-AGTAGCTGTTAAAAGAGT 8753 Query 84887 TGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCA 84946 || ||||| | | || |||||||| | || | |||||| | ||| || |||| ||| Sbjct 8754 AGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCA 8813 Query 84947 ATCACAGAA 84955 || ||||| Sbjct 8814 CTCGCAGAA 8822 Score = 122 bits (134), Expect = 1e-22 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 84478 TACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAG 84537 |||| | ||||| || ||||||||||||||||| |||| ||| || | | |||||||| Sbjct 8058 TACCTAAAGGCATACCGTCAGAGAAAGAACCTTGACCGATAGGGTAGATGATGAATACAG 8117 Query 84538 CAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCAT 84589 ||| ||| || || ||||||||||||||||||||| ||||||||||||||| Sbjct 8118 CAGTTGCAGCAGCTACTGGAGCAGAGTAAGCAACAGCGATCCATGGACGCAT 8169 >seq681 Length=27805 Score = 134 bits (148), Expect = 2e-26 Identities = 129/165 (78%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 84255 GCAACAATATTATAAGTTTCC----TCTTCTTGACCGAACTTGTAACCATAGTTTTGTGA 84310 || || || || |||||||| || ||||||||||||||||||||| ||| ||| Sbjct 3089 GCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTGA 3148 Query 84311 GACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGA 84370 | || || || ||||| ||||||| ||||||||| || | |||||| |||| |||||| Sbjct 3149 TTCGTTATCAGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCAGA 3208 Query 84371 GAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAA 84415 ||||| | |||||||| ||||||||||| || |||||||| || Sbjct 3209 GAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAA 3253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571255512049640