Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq1186 210 6e-50 >seq1186 Length=9024 Score = 210 bits (232), Expect = 6e-50 Identities = 325/464 (70%), Gaps = 0/464 (0%) Strand=Plus/Minus Query 26324 AATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTT 26383 ||||| | |||||||||||||| ||| ||||||||||| || || ||||| | | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 26384 TTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAA 26443 ||| | ||||||||||| || || ||||| || | || ||||| || || | Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 26444 GTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCT 26503 | ||| || ||| || ||||| || ||||| ||||| || || || || || ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 26504 GCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCT 26563 |||||||| |||||||| | ||||| || || || || || || ||| ||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 26564 CTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATC 26623 | || ||||| | ||| ||||||| ||||| | || ||| | ||| || | ||| | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 26624 TGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAAT 26683 | || ||||| || ||| |||| || || ||||| ||||||||||| ||||| | | Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 26684 GGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTT 26743 || || || || |||||||| | | ||||| |||||| | || | || || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 26744 ATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGCATC 26787 ||||| || ||||| ||||| ||||| || || |||||||| || Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTC 5444 Score = 174 bits (192), Expect = 5e-39 Identities = 233/319 (73%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || || |||||| | || ||||||||||||| | || | || |||||||| || | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 25862 ATGATACCCTGCT-TACTCGCAGCCACTACATGTTTT-ATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| || | | |||| ||| | ||| || || | || |||||||| || | Sbjct 8762 ATGAT-CCCTACTCTTTTAACAGCTACTTC-TGTATTCATCATCGCATTCATCGCTGCTC 8705 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | ||||| || || ||||| || |||||||||||||| || || ||| | ||||| |||| Sbjct 8704 CTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACA 8645 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 | || || | || || || |||| | |||||||| ||||| |||| || ||||| | Sbjct 8644 ACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAA 8585 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||| | | || ||||||||| ||||||| || || || || ||| | || Sbjct 8584 TTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 8525 Query 26100 TCTTCCACTTCTTAATAGG 26118 | | ||||||||| |||| Sbjct 8524 TTTGCCACTTCTTCTTAGG 8506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146721986561592