Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq1186 275 2e-69 seq681 80.6 8e-11 >seq1186 Length=9024 Score = 275 bits (304), Expect = 2e-69 Identities = 343/470 (73%), Gaps = 0/470 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| ||| |||| ||| || ||||||||||| |||||||| |||||||| || ||||| Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 ||||||| |||||||| | |||||||||||||| | || | || | || || Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || |||||||| |||||||| || ||||| | || ||||||||||| || | || | | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAA 5617 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || |||| ||| || || || ||||||||||| | |||||| ||||| || Sbjct 5618 GCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 5677 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || ||| || |||||||| | | |||||||| || || || || || ||| Sbjct 5678 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 5737 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 || || || ||||||||||| ||||| || || ||| ||| ||||| ||||| Sbjct 5738 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 5797 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 |||||||| || | || ||||| || | ||||||||||| | |||||| | ||| Sbjct 5798 GTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCA 5857 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATT 36433 || ||||| || |||||||| | ||| ||||| || ||||| | |||||| Sbjct 5858 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 203 bits (224), Expect = 1e-47 Identities = 255/350 (73%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 36608 TTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTG 36667 |||||| | || |||| |||| ||||||| | || |||||| | || || | ||| Sbjct 8475 TTCCCACTCACGGCCCATGTAACAGCAGATACCTAAGAAGAAGTGGCAAACGATTAATTG 8534 Query 36668 ATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAA 36727 || || || ||||| |||||||||||||| || | || |||||||| ||||||||||| Sbjct 8535 GTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGCTTCCCAAATTGGGTAGAA 8594 Query 36728 GTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATA 36787 ||| | |||||| ||||| |||| |||| | || |||| |||||||||||| || || Sbjct 8595 GTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGTGATGATGTTGTTACCGTA 8654 Query 36788 GAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAAC 36847 | ||||| || || || |||||||| |||||||| || || || ||||| ||||| | Sbjct 8655 TAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTCAACAGGAGGAGCAGCGAT 8714 Query 36848 AAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAA 36907 ||||| || | ||| | | ||||||||||| | ||||||||| | || || || Sbjct 8715 GAATGCGATGATGAATACAGAAGTAGCTGTTAAAAGAGTAGGGATCATGATAACACCGAA 8774 Query 36908 CCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 36957 ||| || | || | ||||| | ||| || | ||| || || |||| Sbjct 8775 CCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCACTCGCAGAAAC 8824 >seq681 Length=27805 Score = 80.6 bits (88), Expect = 8e-11 Identities = 118/167 (71%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 36255 GCAACAATGTTATACGTCTCT----TCTTCTTGGCCGAATTTATATCCATAGTTCTGAGA 36310 || || ||||| || || ||| || ||||| ||||| || || ||| ||| || Sbjct 3089 GCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTGA 3148 Query 36311 TTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGC 36370 ||| ||||||||||||| || | || ||||| || | ||||||| |||| Sbjct 3149 TTCGTTATCAGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCAGA 3208 Query 36371 GAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACG 36417 |||||| | |||||||| || || |||||||| | ||| ||||||| Sbjct 3209 GAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAACG 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150449874425682