Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1186 279 2e-70 seq681 91.5 4e-14 >seq1186 Length=9024 Score = 279 bits (308), Expect = 2e-70 Identities = 346/472 (73%), Gaps = 4/472 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| ||| |||| || || |||||||||||||| || ||||| |||||||| |||||| Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 || | ||| |||||||| | || || ||||||||| | | | ||| |||||| Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || |||||||| |||||||| || ||||| | || ||||||||||| || | || | | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAA 5617 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | |||| ||| || || || || ||||||| ||| | |||||| ||||| ||| Sbjct 5618 GCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 5677 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || ||| || |||||||| | | |||||||| || || || || || ||| Sbjct 5678 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 5737 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAG 5543 || || |||||||| ||||| ||||| || || ||| ||| |||| || ||| Sbjct 5738 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGT--TTTCAG 5795 Query 5544 TTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTC 5603 |||||||||| || | |||||||| || | || |||||||| | ||| || | | Sbjct 5796 TTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAAC 5855 Query 5604 CACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATT 5655 |||| ||||| ||||||||||| | ||||||||| || ||||| | |||||| Sbjct 5856 CACCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 167 bits (184), Expect = 7e-37 Identities = 248/349 (71%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 5830 TTCCCATTGGCGTCCCAAGTAAGCTGC-GATACCAATAAGGAAGTGGAAGACGACGAGTT 5888 |||||| | || |||| |||| | || |||||| | | ||||||| | |||| | || Sbjct 8475 TTCCCACTCACGGCCCATGTAA-CAGCAGATACCTAAGAAGAAGTGGCAAACGATTAATT 8533 Query 5889 GGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGA 5948 |||| || || || ||||| | ||| || || ||| ||||||||||| || || |||| Sbjct 8534 GGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGCTTCCCAAATTGGGTAGA 8593 Query 5949 AGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCAT 6008 ||||||| || || ||||| || | || | ||| || || | ||||||||||| || | Sbjct 8594 AGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGTGATGATGTTGTTACCGT 8653 Query 6009 AGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTA 6068 | | || || || | || || ||||| || || |||||||| || || || ||||| | Sbjct 8654 ATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTCAACAGGAGGAGCAGCGA 8713 Query 6069 CGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAA 6128 |||||| | || ||| ||| ||| || ||||| || | || ||||| | ||||| | Sbjct 8714 TGAATGCGATGATGAATACAGAAGTAGCTGTTAAAAGAGTAGGGATCATGATAACACCGA 8773 Query 6129 ACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||| || | || | ||||| | || ||| | ||| || ||||| Sbjct 8774 ACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCACTCGCAGAA 8822 >seq681 Length=27805 Score = 91.5 bits (100), Expect = 4e-14 Identities = 123/169 (73%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 5477 GCAACAATGTTATACGTTTCT----TCCTCTTGGCCGAATTTATATCCATAGTT--CTGA 5530 || || ||||| || |||||| |||||||| ||||| || || ||| ||| |||| Sbjct 3089 GCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTGA 3148 Query 5531 GAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCA 5590 || | | |||||||||||| || | |||||||| || | || |||| ||| Sbjct 3149 TTCGTTATC--AGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCA 3206 Query 5591 GCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACG 5639 | ||| || | |||||||| || ||||||||||| | ||||||||||| Sbjct 3207 GAGAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAACG 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152645008395438