Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq1186 293 7e-75 seq681 80.6 8e-11 >seq1186 Length=9024 Score = 293 bits (324), Expect = 7e-75 Identities = 347/470 (74%), Gaps = 0/470 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| |||| |||||||| |||||||||||||| |||||||| |||||||| || ||||| Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 ||||||| |||||||| | |||||||||||||| | || | || | || || Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || |||||||| |||||||| || ||||| | || ||||||||||| || | || | | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAA 5617 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 || |||| ||| || || || ||||||||||| | |||||| ||||| ||| Sbjct 5618 GCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 5677 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || ||| || |||||||| | | |||||||| || || || || || ||| Sbjct 5678 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 5737 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 || || || ||||||||||| ||||| || || ||| ||| ||||| ||||| Sbjct 5738 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 5797 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 |||||||| || | || ||||| || | ||||||||||| | |||||| | ||| Sbjct 5798 GTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCA 5857 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATT 25913 || ||||| || |||||||| | ||| ||||| || ||||| | |||||| Sbjct 5858 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 199 bits (220), Expect = 1e-46 Identities = 254/350 (73%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 26088 TTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTG 26147 |||||| | || |||| |||| |||| || | || |||||| | || || | ||| Sbjct 8475 TTCCCACTCACGGCCCATGTAACAGCAGATACCTAAGAAGAAGTGGCAAACGATTAATTG 8534 Query 26148 ATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAA 26207 || || |||||||| || ||||||||||| || | || |||||||| ||||||||||| Sbjct 8535 GTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGCTTCCCAAATTGGGTAGAA 8594 Query 26208 GTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATA 26267 ||| | |||||| |||||||||| |||| | || || | |||||||||||| || || Sbjct 8595 GTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGTGATGATGTTGTTACCGTA 8654 Query 26268 GAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAAC 26327 | ||||| || || || |||||||| |||||||| || || || ||||| ||||| | Sbjct 8655 TAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTCAACAGGAGGAGCAGCGAT 8714 Query 26328 AAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAA 26387 ||||| || | ||| | | ||||||||||| | ||||||||| | || || || Sbjct 8715 GAATGCGATGATGAATACAGAAGTAGCTGTTAAAAGAGTAGGGATCATGATAACACCGAA 8774 Query 26388 CCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 26437 ||| || | || | ||||| | ||| || | ||| || || |||| Sbjct 8775 CCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCACTCGCAGAAAC 8824 >seq681 Length=27805 Score = 80.6 bits (88), Expect = 8e-11 Identities = 118/167 (71%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 25735 GCAACAATGTTATACGTCTCT----TCTTCTTGGCCGAATTTATATCCATAGTTCTGAGA 25790 || || ||||| || || ||| || ||||| ||||| || || ||| ||| || Sbjct 3089 GCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTGA 3148 Query 25791 TTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGC 25850 ||| ||||||||||||| || | || ||||| || | ||||||| |||| Sbjct 3149 TTCGTTATCAGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCAGA 3208 Query 25851 GAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACG 25897 |||||| | |||||||| || || |||||||| | ||| ||||||| Sbjct 3209 GAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAACG 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151989028127508