Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1186 340 2e-88 seq681 104 3e-17 >seq1186 Length=9024 Score = 340 bits (376), Expect = 2e-88 Identities = 362/474 (76%), Gaps = 8/474 (2%) Strand=Plus/Minus Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 || ||| |||||||||| ||||| ||| | || || || |||||||| ||||||||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || |||||||||||||| | || ||||||||| | ||| | ||||| ||||| | Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || ||| ||| ||||| |||||||| ||||||||||| ||||||||||| || ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 || || || ||||||||||| || |||||||| || || || ||||||||||| |||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | ||||||||| | ||||| | || || || || || ||||| || || | ||| | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---A 163377 ||||||||||| |||||| | ||||| |||||||||||||| || || || ||| | | Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 163378 GGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT-GGTATGGA 163436 ||| || || | |||||||| || ||| | ||| | || |||| |||||||| Sbjct 5547 GGTCGT---GTATTAAACACTTGGGCTGACATCATCAACCGTGC-TAACTTAGGTATGGA 5492 Query 163437 AGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 || ||||| || ||||| |||||||||||||| || ||| | ||| ||| ||| Sbjct 5491 GGTAATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 214 bits (236), Expect = 2e-50 Identities = 265/360 (74%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 162508 TGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCT 162567 ||| |||| || ||| || || | || |||||||||||||||| | ||||||||| Sbjct 8813 TGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCT 8754 Query 162568 TGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCTCCAGTT 162624 || || | |||| |||| |||||||| |||||||| || || ||||| ||| Sbjct 8753 A-CT--CTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCTCCTGTT 8697 Query 162625 GATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATC 162684 || |||||||||||| | || || ||| | |||||| | | || ||||||||||||||| Sbjct 8696 GACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAACATCATC 8637 Query 162685 TCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAA 162744 |||||||||| | |||| || || || || ||| | |||||||| || || |||||| Sbjct 8636 ACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATTTGGGAA 8577 Query 162745 GCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCAC 162804 ||||| ||||||| |||||||| || || ||||| |||| |||| | | || | |||| Sbjct 8576 GCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCAC 8517 Query 162805 TTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGT 162864 ||| | | || ||| ||| || ||| |||||||| | |||| ||| |||||| Sbjct 8516 TTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCGTTTAGGT 8457 Score = 113 bits (124), Expect = 5e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 162865 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTC 162924 |||||||| |||||| |||||| |||||||| |||||| |||| ||| ||||| ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 162925 TTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTA 162976 | |||| ||| |||||||||||||||||||||||| |||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 104 bits (114), Expect = 3e-17 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 163031 TGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTA 163090 ||| | | ||||| ||| | || || || ||||| |||||||||||| | || ||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 163091 TGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGA 163150 |||||||||| | || ||||||||| | ||| | ||||| ||||| | || ||| | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 163151 ACTACGGTTATAAGTTCGGACAAGAAGA----AGAGACTTACAACATTGTTGC 163199 || ||||| |||||||| ||||| || ||| ||||||||||| || || Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553067287952520