Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq1134 509 2e-139 seq1186 322 5e-83 seq681 107 2e-18 >seq1134 Length=9887 Score = 509 bits (564), Expect = 2e-139 Identities = 732/1026 (71%), Gaps = 8/1026 (1%) Strand=Plus/Minus Query 164604 TGGTTCGACATCCTAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCT 164663 |||||||| | |||||||||| | | ||| || || || || || || ||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 164664 GGATTACTACTTCTTCCCAC-TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGC 164722 || ||| || || |||||| |||||| | || | || |||||| | ||||| ||| | Sbjct 7876 GGTTTATTA-TTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 164723 TTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTT 164782 ||||| || |||||||| |||||| | || |||| || | |||||| |||||| Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 164783 TCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 164842 | ||||||||||| || || |||||| | |||||| || || |||||| | | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 164843 GGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTT 164902 ||||||||| | || || |||| || |||| |||||| || || ||||| ||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 164903 CGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGC 164962 ||| ||| | |||||||| || | |||| ||||||||| | || || ||||| | || Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 164963 ACGTCTCATTGGTATC---CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGT 165019 ||| || || | | ||||||||||| || || || ||||| | || ||| |||| Sbjct 7577 GCGT-TC--TGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGT 7521 Query 165020 TTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTC 165079 || || || ||| | || ||||| | ||||| || ||||||| ||||| || Sbjct 7520 ATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAG 7461 Query 165080 CTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGAC 165139 ||||| || ||||||||||| | || | | ||| | || || |||||||||||||| Sbjct 7460 TTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGAC 7401 Query 165140 CCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGC 165199 || ||||| ||||| |||||||||||||| ||| | || || | || || ||| ||| Sbjct 7400 TCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 7341 Query 165200 TATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTT 165259 ||||| || | || || ||||| ||||||| ||| ||||| || || || || || Sbjct 7340 AATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTT 7281 Query 165260 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 165319 || || | | ||||| | ||||| ||||| || ||||| ||||| ||| | || Sbjct 7280 CCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATT 7221 Query 165320 CTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 165379 |||||| ||||| ||||| | || ||| ||||||| || ||| | || || |||||| | Sbjct 7220 CTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCT 7161 Query 165380 GTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAA 165439 || || || |||| |||||||||| | ||||| | ||||| | ||| | || Sbjct 7160 ATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAA 7101 Query 165440 CCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGA 165499 ||| | || || ||||| || |||||| ||| |||| || |||||||| || ||||| Sbjct 7100 CCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGA 7041 Query 165500 GACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGC 165559 || ||||| || ||||| ||| |||| |||||||| | ||||| ||| |||| || Sbjct 7040 AACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCA 6981 Query 165560 TGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCT 165619 || ||||| || ||| || | ||||| ||||||||||| ||| | || ||||| || Sbjct 6980 AGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 6921 Query 165620 TTAATA 165625 |||||| Sbjct 6920 TTAATA 6915 >seq1186 Length=9024 Score = 322 bits (356), Expect = 5e-83 Identities = 361/483 (75%), Gaps = 0/483 (0%) Strand=Plus/Minus Query 163414 AACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTC 163473 || ||| | |||||||| ||||| ||||| || || |||||||| || ||||| ||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 163474 TTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACT 163533 ||||| || ||||| || | || || ||||| | ||||||| || ||||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 163534 GAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCA 163593 || ||| ||| |||||||||||| |||||||||||||| || ||||||||||| || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 163594 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGT 163653 ||||| || ||||| |||||||| ||||||||||| || |||||||||||| | Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 163654 CTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTA 163713 | ||||||||| | || || ||||| || || | || |||||||| || | || || Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773 || ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTT 163833 |||||||| | ||||||||||| ||| | | ||||| ||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 163834 ATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGAGTCCACTCCT 163893 |||||||| |||||||| ||||||||||| || || | ||| ||| ||| | || || Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAAGCTCCTTCT 5428 Query 163894 GTG 163896 ||| Sbjct 5427 GTG 5425 Score = 260 bits (288), Expect = 2e-64 Identities = 280/368 (76%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 ||||||||||||| | |||||||| | ||||| | || ||||||||||||| || | Sbjct 8823 TTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTAT 8764 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 ||||| || ||||| || |||| ||| ||||| |||||| |||| ||| ||||||||| Sbjct 8763 CATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTC 8705 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | ||||| ||||| || || ||||||||||| || |||||||| | | || || |||| Sbjct 8704 CTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACA 8645 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 |||||||| ||||||| ||| | || | || ||||| || ||| | |||||||| || | Sbjct 8644 ACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAA 8585 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | |||||||| || || ||||| |||||| | || ||||||||||||| |||| | | | Sbjct 8584 TTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 8525 Query 163190 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATC 163249 | | |||||| | | || |||| || ||||| ||||| |||||| | || | | Sbjct 8524 TTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 163250 GCTTAGGT 163257 | |||||| Sbjct 8464 GTTTAGGT 8457 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 163258 ATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTC 163317 ||||| || |||||| ||| || |||||||| || || || || ||| | || || ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 163318 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCC 163361 | |||| ||| |||||||||||||||||||||||| ||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCC 8066 >seq681 Length=27805 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 163421 TGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGG 163480 || ||| | | ||||| ||||| || || |||||||| |||||||| ||| | ||||| | Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 163481 CAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCAC 163540 || |||| || | || || ||||| | ||||||| || ||||| | || ||| Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 163541 AAAACTATGGTTACAAGTTTGGTCAAGAAGA----AGAGACATACAACATCGTTGCA 163593 ||| |||||||||||| |||||||| || ||| || ||||||||||| ||| Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563191767376040