Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 251 1e-61 seq28 113 8e-20 >seq7 Length=421595 Score = 251 bits (278), Expect = 1e-61 Identities = 388/553 (70%), Gaps = 23/553 (4%) Strand=Plus/Minus Query 212867 GTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTC 212926 |||||| |||||| || | |||| | | |||||| |||| || | | ||| || Sbjct 314344 GTTCCACAGGCCCATGCGGTACAGGTCGTGCAGCAGGTGCTGGTTCACGACCGTGAACTC 314285 Query 212927 ACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTT 212986 || || ||||| | | | ||| | ||| || ||||||||||| | || ||||||||| Sbjct 314284 GCCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTT 314225 Query 212987 CCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCAC 213046 ||||||||||| | ||| || ||||||||||| |||| ||| || ||| | ||| Sbjct 314224 ACCCAGAATCTGGGAGGTGGATGCGGTGGGCATGGGCGCCAGCAGCAGCGAGTTGCGCAC 314165 Query 213047 TCCGTGCTCGCCGATGAG-GCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCT 213105 |||| || | ||| |||| | || | ||||||||||| | ||||| Sbjct 314164 GCCGTTGGCGGCAATGTCTGCGCGCAGGC-CAGCCCAGTCCCAGC---------GGTCCG 314115 Query 213106 CGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGT 213165 | |||||| | |||||||||| ||||| | ||| | ||| ||| ||| ||| Sbjct 314114 AGCCCTTCATGCCCCACATGTCATGCTGCAGCACGCCCTGAGACACAGGGGAGCCAGGGT 314055 Query 213166 AAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGT 213225 | | |||||||| | || |||||||||||| ||||| || |||||| ||||||| Sbjct 314054 ATGTCTCATAGGGGCCCTCCTTCTTGGCCAGCTCCATGGACGTCTTCAGGGCCGCGTAGT 313995 Query 213226 AGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCA 213285 ||||| ||||| || ||| |||| |||| || ||||| || || |||||||| Sbjct 313994 AGATGCACTCAAAGATGTCCTTGTTCAGCTGCTGCGCCTCAGGCGAGTCAAAGGGCATGC 313935 Query 213286 TCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCA 213345 || | ||||| | |||||||| |||||||||||||| || ||||| | ||| | || Sbjct 313934 CCAGCAGCAGGAACGCGTCAGCCAGGCCCTGGACCCCGATACCAATGGGGCGGTGGCGCA 313875 Query 213346 GGTTAGACTTGGAGCACTC------CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGT 213399 || ||||||| ||| || || |||||| ||||| |||||||||||||| Sbjct 313874 GG------TTGGAGCGCTCGGCGGTCTTCACAGGGTAATAGTTGACGTCGATGATCTTGT 313821 Query 213400 TGAGGTTGCGGGT 213412 | ||||||||||| Sbjct 313820 TCAGGTTGCGGGT 313808 Score = 132 bits (146), Expect = 9e-26 Identities = 130/167 (78%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 48108 GCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGA 48167 ||||||||||| || ||| |||| |||||||| |||||| ||||||||| || || Sbjct 151327 GCAGGTGCTTG---TACAGCGTGCACGCAAAGTCGGTGTGCAGGCCTTCGTCACGAGAGA 151383 Query 48168 TGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTG 48227 |||| ||||| |||||| |||| || ||||||| | || || |||||||||||| || | Sbjct 151384 TGAGGACGTTTGAGAAGGAGAGGCCGGGCATGAGCAGCCGCTTTTTGAGCCAGAAGATGG 151443 Query 48228 CCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 | ||| |||||||| ||| |||||||||||| || |||||| Sbjct 151444 CACAGAAGGAGCCAGAAAAGTGGATGCCCTCCACGCAGGCAAACGCG 151490 Score = 122 bits (134), Expect = 2e-22 Identities = 274/407 (67%), Gaps = 20/407 (5%) Strand=Plus/Minus Query 213996 TTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATAC 214055 ||||||| |||||| | ||| || | |||||||| |||||||| || || ||| Sbjct 312490 TTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCGTTGGTGCCGCGGATGTAC 312431 Query 214056 GAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATC 214115 ||||||| ||| | | |||| |||||||| || ||||| ||||| ||||||||||| Sbjct 312430 GAGCCGGTGGCACGTATGTTGTGGATGGAGAGGCCGATGCCGCCGGCCGACTTGGAGATC 312371 Query 214116 ATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGC 214175 | || || | | | || || ||||||| | ||| || | || || | Sbjct 312370 ACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGGAATCGTTCTTGGCACACACC 312311 Query 214176 AAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCA 214235 | ||||||| || |||||||| | || | ||| |||||||| || |||||| ||| Sbjct 312310 AGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGTTGAAGAGGGTGGGGGAGGCG 312251 Query 214236 TGGATCATAAACTTG---TTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCG 214292 || | | ||| | | ||| | ||| ||| || | | | | | |||||| Sbjct 312250 TG---CGTGAACCAGCGCTCAGACATGAGGTGGTACGTGTTGATGGCGGCATCGATGTCA 312194 Query 214293 TGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCC 214351 | ||||||||| | || ||| | |||||||||||||||||| | ||| || | || Sbjct 312193 TCCTTGTGGATGCCCACGGC-CACGCGCATCAGCATGTGCTGGGGGCGCTCAAT--GACC 312137 Query 214352 TTTGGGGCCCTTG------AGCAGGTAGGAGCGCTCCAGAGTCTTGA 214392 || ||| ||| || ||||||||||||||||| |||| || Sbjct 312136 TT----GCCGTTGATGCGCAGGAGGTAGGAGCGCTCCAGCGTCTGGA 312094 Score = 116 bits (128), Expect = 7e-21 Identities = 128/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 213480 GGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATG 213539 ||||| |||||| ||||||||||| || || ||| | | |||||||||| | Sbjct 313460 GGCAGCGCGATGGACGCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCGTGTACTCCACG 313401 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 ||||| |||||||||||| ||| |||||| ||||||||||| ||||| ||| ||||| Sbjct 313400 ATCTCAGTGCACAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGAC-TTGCG 313342 Query 213600 TTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 | ||| || |||||||| |||||||| ||| || ||||| | ||| Sbjct 313341 GTTGCACGAGTCCTTGTACAGCATGTACGGGTTGCCCGTCTCGATCTG 313294 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/190 (72%), Gaps = 5/190 (3%) Strand=Plus/Minus Query 213794 CCAGTCCCCGTCATCTCTG-ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 ||||||| ||| | ||| || | || |||||||||||| || |||||| || | Sbjct 312933 CCAGTCCTCGTTGT-TCTCCACACGCTCCATGAACAGGTCATTGATCCACAGGCCGTAAA 312875 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 | ||||| | | | ||| ||| || ||| ||||| || ||||| || |||| Sbjct 312874 AGAGGTCACGCGCGCGTGCCTCCTCCTTGCCGTGGTTCTTGCGTAGGTCTAGGAACTCAA 312815 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGC 213969 | | ||| |||||||| |||||||||||||| |||||||||||| | |||| || | Sbjct 312814 ACACGTCTGCGTGCCAGGGCTCCATGTAGATAGCAAAGGCGCCCTTGCGCTTGCCACCAC 312755 Query 213970 CCTGGTCCAC 213979 |||||||||| Sbjct 312754 CCTGGTCCAC 312745 >seq28 Length=264079 Score = 113 bits (124), Expect = 8e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| |||||||| |||||| ||| ||||| ||| ||||||| ||||||| Sbjct 66417 TACAGCAGGCATGCAAAGTCGGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAA 66476 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| || || ||||||| || | || ||||||||||| || | ||| ||||| Sbjct 66477 AAGGTCAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCG 66536 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 || ||||||||||||||||| || || || || Sbjct 66537 GAAAAGAAGATGCCCTCCACAGCAGCAAAGGC 66568 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| |||||||| | |||||||||||||| ||||| |||| || |||||| ||||| Sbjct 65748 TGGTACTCCCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGATCTCC 65807 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATA 47928 || || |||||||||| |||||| || Sbjct 65808 ATCCAGTCAAAGGGGTTGGCTGTGTTGTA 65836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931503305342720