Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq28 147 4e-30 seq7 111 3e-19 >seq28 Length=264079 Score = 147 bits (162), Expect = 4e-30 Identities = 138/173 (80%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT- 25928 |||| ||||| || || |||||||||||||||||||||||||| || ||| || || Sbjct 66586 TTTGCTGAGCGCCTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTTC 66527 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 ||| ||||||||||||||||| || || ||||||||| ||| |||||||||||| Sbjct 66526 TGCT-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAACGA 66468 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||| | | |||||||| || |||| || ||||| |||||||| |||| Sbjct 66467 GCTCATCTCCCGTGACGAGGGCCTGCACACCGACTTTGCATGCCTGCTGTACA 66415 >seq7 Length=421595 Score = 111 bits (122), Expect = 3e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| ||||| || |||||||| | | || |||| | |||||| || || ||| Sbjct 313445 GCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCGTGTACTCCACGATCTCAGTGCACAGG 313386 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| |||||||||||||||||||| | || ||||||||||| ||| | ||||||| Sbjct 313385 TTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGACTTGCGGTTGCACGAGTCCTTG 313326 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877 || ||||| | || ||| ||||| | ||| ||| | || || Sbjct 313325 TACAGCATGTACGGGTTGCCCGTCTCGATCTGCGCCTCGAGGAT 313282 Score = 109 bits (120), Expect = 1e-18 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 221418 TCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAG 221477 ||||||| |||| ||||||| ||||||||| |||||| || || ||||| || | Sbjct 314009 TCAGGGCCGCGTAGTAGATGCACTCAAAGATGTCCTTGTTCAGCTGCTGCGCCTCAGGCG 313950 Query 221478 AAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | |||||||| | ||||| | | || |||| ||||| ||||| || |||||||| | Sbjct 313949 AGTCAAAGGGCATGCCCAGCAGCAGGAACGCGTCAGCCAGGCCCTGGACCCCGATACCAA 313890 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCT--TCTGGCACGGGATAAAAGTTGACGTC 221595 |||| | ||| | | |||||| ||| || ||| ||| || ||| |||||||||| Sbjct 313889 TGGGGCGGTGGCGCAGGTTGGA-GCGCTCGGCGGTCTT-CACAGGGTAATAGTTGACGTC 313832 Query 221596 GATCAGATTGTTGAGGTT 221613 ||| | ||||| ||||| Sbjct 313831 GATGATCTTGTTCAGGTT 313814 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 221107 CATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGA 221166 || ||||| |||||| || ||| || ||||| ||||| | | | ||| | ||| || Sbjct 314311 CAGGTGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGA 314252 Query 221167 AGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCAT 221226 ||| | || || | || ||||||||| ||||| ||||| | ||| ||||||||||| Sbjct 314251 GGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGTGGGCAT 314192 Query 221227 GGGTGCCACCAGCAGACTGTTGCGCA 221252 ||| |||| |||||| |||||||| Sbjct 314191 GGGCGCCAGCAGCAGCGAGTTGCGCA 314166 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/211 (72%), Gaps = 9/211 (4%) Strand=Plus/Minus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| || ||||||||| | | || || |||||||| ||||| |||| || ||| Sbjct 151540 TGGGCAATCAAGTGGATCTCCT--CGGACCG-TACGTTTGCTGAGCGCTTGGTCGCGTTT 151484 Query 25894 GC-TGCTGTGGAGGGCATCT--TTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 || ||| |||||||||||| ||||| | | || || ||||||||||||||||| Sbjct 151483 GCCTGC-GTGGAGGGCATCCACTTTTCTG--GCTCCTTCTGTGCCATCTTCTGGCTCAAA 151427 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || | | ||||||||| || | ||| || |||| |||||| | ||||| || Sbjct 151426 AAGCGGCTGCTCATGCCCGGCCTCTCCTTCTCAAACGTCCTCATCTCTCGTGACGAAGGC 151367 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 || |||| || ||||| ||| ||| |||| Sbjct 151366 CTGCACACCGACTTTGCGTGCACGCTGTACA 151336 Score = 86.0 bits (94), Expect = 1e-11 Identities = 184/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 222218 TTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTAC 222277 ||||||| ||| || | || || | |||||||| |||||||||||| |||||| Sbjct 312490 TTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCGTTGGTGCCGCGGATGTAC 312431 Query 222278 GCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATC 222337 | ||| ||| | | ||| | || | |||||| || ||||| || |||||| Sbjct 312430 GAGCCGGTGGCACGTATGTTGTGGATGGAGAGGCCGATGCCGCCGGCCGACTTGGAGATC 312371 Query 222338 ATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGC 222397 | || || |||||| ||||| |||||| || || || || | |||| | || | Sbjct 312370 ACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGGAATCGTTCTTGGCACACACC 312311 Query 222398 AGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCG 222457 || || || || |||| ||| | || || | || ||| || || ||||| |||| Sbjct 312310 AGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGTTGAAGAGGGTGGGGGAGGCG 312251 Query 222458 TGTGTAAAGTAGCCCCTAGACATCAGATCGTACGT 222492 || || || ||| | |||||| || | |||||| Sbjct 312250 TGCGTGAACCAGCGCTCAGACATGAGGTGGTACGT 312216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928815390451520