Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1134 518 3e-142 seq1186 316 2e-81 seq681 114 1e-20 >seq1134 Length=9887 Score = 518 bits (574), Expect = 3e-142 Identities = 724/1011 (72%), Gaps = 8/1011 (1%) Strand=Plus/Minus Query 9827 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTT 9886 ||||||||| | | ||| || || || || || |||||||| || || || || || Sbjct 7921 GATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTA-TTATTATT 7863 Query 9887 CCCAC-TGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTG 9945 |||| |||||| ||||| | ||||| ||| | ||||| || || ||||| || || Sbjct 7862 CCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATG 7803 Query 9946 GTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGT 10005 |||||| || || | |||| | |||| | || ||| ||| ||| | ||||| ||||| Sbjct 7802 GTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 7743 Query 10006 CTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 10065 ||||| |||||| | |||||| || || |||||| | | ||||||||||| | || Sbjct 7742 TTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCA 7683 Query 10066 GGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 10125 || ||||| || ||| |||| || || || | ||| |||| || || | ||||| Sbjct 7682 AGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGG 7623 Query 10126 AGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAAT 10185 || || | ||||||||| || |||||||| || ||||| | ||| | | || || Sbjct 7622 TGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGCGCGTTC---TGTAAA 7566 Query 10186 C---CGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTT 10242 | || |||||||| || ||||| || || | || ||| |||| || || ||| || Sbjct 7565 CTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATTCGTATCTGTATT 7506 Query 10243 CCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGC 10302 | | || || || | || || || |||||||||| || || ||||| || || || || Sbjct 7505 CTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAGC 7446 Query 10303 GATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCA 10362 || ||||| || |||| ||| ||||||| || || || ||||| || || || ||||| Sbjct 7445 AATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCCA 7386 Query 10363 TATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCAC 10422 |||||||| ||||||||| | | || | || | ||| ||||| ||||| | || Sbjct 7385 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAAC 7326 Query 10423 TGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAG 10482 ||||||||||||| | | ||||||| || || ||||||||| ||||| | Sbjct 7325 TGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCGTGCTTTCAACCC 7266 Query 10483 CACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATT 10542 || |||| ||||| || || || ||||| ||||||||| | |||||||| ||||| || Sbjct 7265 AACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTGGTCACAGATTTT 7206 Query 10543 TGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTAT 10602 || | |||||| || ||||||||| | || ||||| ||||| || ||||| |||| Sbjct 7205 CGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATTCGTACCAGTTAC 7146 Query 10603 GGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGA 10662 |||||||||| | | ||||| | ||||| | ||| | || || | || || || Sbjct 7145 TGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCTAAGAGCCTATGA 7086 Query 10663 TTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAA 10722 |||||| ||||| || ||| | || | ||||||||||| ||||| || |||||||| || Sbjct 7085 TTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAACATTCTATACAAA 7026 Query 10723 GAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGA 10782 |||||| | | || |||||| ||||||| |||||||| | |||||||||||||| Sbjct 7025 AAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGACCAACCACACGA 6966 Query 10783 AAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGATA 10833 | | || || ||||| |||||||| | ||| | ||||| || || | ||| Sbjct 6965 ACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTTTAATA 6915 >seq1186 Length=9024 Score = 316 bits (350), Expect = 2e-81 Identities = 352/470 (75%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 8770 AACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTC 8829 || ||| | |||||||| ||||||||| | |||||||||||||| || || || || | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 8830 TTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACC 8889 || || || ||||| |||||| | || |||||||| | | ||||| || || |||| | Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 8890 GAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCC 8949 || || ||| ||| |||||||||||||||||||| |||||||||||||| || || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 8950 GCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGC 9009 || || || ||||||||||| || ||||||||||| || || || ||||| ||| | Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 9010 TTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTC 9069 || || |||||| | ||||| ||||| || || | || |||||||| || | || | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 9070 TCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAA 9129 || || |||||||||||| | || || ||||||||||||||||| || | ||| ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 9130 GGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTC 9189 || || || | ||||| ||||| ||| | | ||||| || | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 9190 ATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGA 9239 ||||| ||| | ||||| ||||||||||| || ||| | || ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 275 bits (304), Expect = 6e-69 Identities = 277/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 ||| ||||| ||| ||||||| || | || || || || |||| ||||| || ||| | Sbjct 8823 TTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTAT 8764 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 ||||||||| || ||| | | ||||| | ||||| | ||||||| | |||||||| Sbjct 8763 CATGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 |||||| |||||||| || ||||| || |||||| |||| || | | ||||||||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 ||||||| ||||||| ||| | || | |||||||| || || | ||||||||||| || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| ||||||||||| |||||| | |||||||||||||||||||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 || ||||||| || | || ||| ||| ||||| ||||| |||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Score = 116 bits (128), Expect = 4e-21 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 8614 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTC 8673 |||||||| |||||| |||||| ||||||||||| || || ||||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 8674 CTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTA 8725 | |||| ||| | ||||||||||| |||||||| ||||||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 114 bits (126), Expect = 1e-20 Identities = 131/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 8777 TGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCG 8836 || ||| | | ||||||||| | |||||||||||||| ||||| || || | || || | Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 8837 CAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTC 8896 || |||| |||||| | || |||||||| | | ||||| || || || | ||| || Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 8897 AAAACTATGGCTACAAGTTCGGTCAAGAAGA----GGAAACTTACAACATTGTTGC 8948 ||| ||| ||||||||||||||||| || |||||||||||||| || || Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516463646952000