Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1134 506 2e-138 seq1186 342 6e-89 seq681 104 3e-17 seq869 93.3 5e-14 >seq1134 Length=9887 Score = 506 bits (560), Expect = 2e-138 Identities = 711/995 (71%), Gaps = 10/995 (1%) Strand=Plus/Minus Query 162146 AGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCAC-TGCTTATCTTG 162204 |||||||||||| || || || ||||| || || || || |||||| |||||| ||| Sbjct 7904 AGACCGTTTCGTATTCGTAGGTTGGTCAGGT-TTATTATTATTCCCATGTGCTTACTTTG 7846 Query 162205 CTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTG 162264 | | || |||||| | ||||| || || || || || ||||| || || || | | Sbjct 7845 CATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATGGTACACACATGGTTTAG 7786 Query 162265 CGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACG 162324 | | ||| || | || ||| ||||| | || || || ||||| ||||| || || Sbjct 7785 CAACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTTTCAACTCCTGCTAACA 7726 Query 162325 CTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCT 162384 |||||| || || ||||| || ||||||||||||| | ||||| || || | || | Sbjct 7725 GTATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCAAGGTGATTTAACACGTT 7666 Query 162385 GGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAG 162444 ||| |||||| || || | ||| |||| || || | ||||| || |||| | || | Sbjct 7665 GGTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGGTGCGTTTGGTTTAATCG 7606 Query 162445 GTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA----TTCGTCCTTACAAT 162500 |||||||| | || || |||||| | || || || ||| | ||||||||||| Sbjct 7605 GTTTCATGTTACGTCAATTTGAAATTGCGCGT----TCTGTAAACTTACGTCCTTACAAC 7550 Query 162501 GCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTG 162560 || || |||||||||| || ||| |||||||||| ||| || | || || ||||| Sbjct 7549 GCAATCGCTTTCTCAGCACCAATTTCTGTATTCGTATCTGTATTCTTAATTTACCCTTTA 7490 Query 162561 GGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 162620 || ||||| |||||||||||||| || || || |||||||||||||| || | Sbjct 7489 GGTCAATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAGCAATCTTCCGTTTTATT 7430 Query 162621 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCA 162680 || ||| |||| || ||||| |||||||| || || || || ||||||||||| || || Sbjct 7429 CTATTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCCACATGATGGGTGTTGCT 7370 Query 162681 GGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTG 162740 ||| | | |||| ||| || | | ||| ||||| || | || || ||||| ||| | Sbjct 7369 GGTGTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAACTGTAGAAAACACATTA 7310 Query 162741 TACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAA 162800 | ||||||||| || || |||||||| || || || | ||||| | |||||| Sbjct 7309 TTCGAAGATGGTGATGGTGCTAACACTTTCCGTGCTTTCAACCCAACACAAGCTGAAGAA 7250 Query 162801 ACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGT 162860 || || || ||||| ||||| ||| | ||||||||||||||||||||| | |||||| | Sbjct 7249 ACTTACTCAATGGTAACTGCTAACAGATTCTGGTCACAGATTTTCGGTGTAGCTTTTGCT 7190 Query 162861 AACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGT 162920 ||||| || ||||| || ||||| ||||| || || || || | ||||| |||| ||| Sbjct 7189 AACAAACGCTGGTTACACTTCTTCATGCTATTCGTACCAGTTACTGGTCTTTGGATGAGT 7130 Query 162921 TCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAA 162980 | || || | ||||| | ||| | || || | || || || ||||| ||||| ||| Sbjct 7129 GCAATTGGGGTGATTGGCTTAGCTTTAAACCTAAGAGCCTATGATTTTGTTTCTCAGGAA 7070 Query 162981 GTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAAT 163040 | || || || ||||| ||||||||||| || ||||||||||| || || | | ||| Sbjct 7069 ATCCGAGCTGCCGAAGATCCTGAGTTTGAAACATTCTATACAAAAAATATCTTATTAAAT 7010 Query 163041 GAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCT 163100 ||||| |||| || ||| | || | |||||||| || || || || |||||| Sbjct 7009 GAAGGTATTCGTGCGTGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCT 6950 Query 163101 GAAGAGGTCTTGCCAAGAGGCAACGCTCTATGATA 163135 ||||| || || || | || |||||||| | ||| Sbjct 6949 GAAGAAGTATTACCTCGTGGTAACGCTCTTTAATA 6915 >seq1186 Length=9024 Score = 342 bits (378), Expect = 6e-89 Identities = 360/474 (76%), Gaps = 0/474 (0%) Strand=Plus/Minus Query 161407 ATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCA 161466 |||||||| ||||| ||| | || || || ||||| ||||| ||||| | ||| || Sbjct 5898 ATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 5839 Query 161467 ATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAG 161526 ||||||||||| | || || ||||| | | |||||||| || |||||||| || Sbjct 5838 ATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCT 5779 Query 161527 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGG 161586 ||| ||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| Sbjct 5778 AACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 5719 Query 161587 TACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTC 161646 ||||| |||||| | || |||||||||||||| ||||||||||| || || | |||||| Sbjct 5718 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTC 5659 Query 161647 TTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATG 161706 ||| | ||||||||||| ||||| | || ||||| || || | || || || ||| Sbjct 5658 TTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTATG 5599 Query 161707 GCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTT 161766 || |||||| | || || ||||||||||||||||| | || || ||| ||| || Sbjct 5598 GCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTGTA 5539 Query 161767 ATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAG 161826 | ||||| ||||| ||| | ||||||||||| | || ||||| || ||||| || Sbjct 5538 TTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATGAA 5479 Query 161827 CGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAGTCCACTCCTGTG 161880 || || ||||||||||||||||| ||| | ||| ||| ||| | || ||||| Sbjct 5478 CGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAAGCTCCTTCTGTG 5425 Score = 241 bits (266), Expect = 1e-58 Identities = 261/341 (77%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 160897 ACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCCTGCT-TGCTCGC 160955 || || ||||| | || | ||||||||||| || | ||||| |||| || | | | Sbjct 8801 ACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGAT-CCCTACTCTTTTAAC 8743 Query 160956 TGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCA 161014 ||||| | ||| |||||||| || ||| | | |||||| ||||| |||||||| || | Sbjct 8742 AGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCCTCCTGTTGACATCGATGGTA 8684 Query 161015 TTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTA 161074 | ||||| || || ||||||| | | || || |||||||||||| |||||||||||| Sbjct 8683 TCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAACATCATCACTGGTGCTGTTA 8624 Query 161075 TCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGG 161134 ||||| | |||||||| |||||| | ||||||||||| || ||||||||||| ||| | Sbjct 8623 TCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATTTGGGAAGCAGCTTCTCTTG 8564 Query 161135 ACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCA 161194 |||| ||| | |||||||||||||||| |||| | | || | ||||||| | | || | Sbjct 8563 ACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTA 8504 Query 161195 TCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 161235 ||| ||||||||| |||||||||||| | |||| |||| Sbjct 8503 TCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCGT 8463 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 161242 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTC 161301 |||||||| ||||| || || ||||||||||| || ||||| || | ||| || ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 161302 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCT 161346 | |||| ||| |||||||||||||||||||||| | |||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCT 8065 >seq681 Length=27805 Score = 104 bits (114), Expect = 3e-17 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 161408 TGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAA 161467 ||| | | ||||| ||| | || || || ||||| || || ||||| | ||| |||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 161468 TGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGA 161527 |||||||||| | || || ||||| | | |||||||| || || ||||| || | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 161528 ACTATGGTTACAAGTTCGGTCAAGAAGA----AGAGACCTACAACATCGTTGC 161576 || ||||||||||||||||||||| || ||| || ||||||||||| || Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 >seq869 Length=17817 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||| Sbjct 12204 CGGGATGTAGCGCAGTTTGGTAGCGCATGTGCTTTGGGAGCATAGGGTCGCAGGTTCGAA 12263 Query 157750 TCCTGTCACCCCGA 157763 |||||||| ||||| Sbjct 12264 TCCTGTCATCCCGA 12277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547729856954280