Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1186 224 3e-54 >seq1186 Length=9024 Score = 224 bits (248), Expect = 3e-54 Identities = 328/464 (71%), Gaps = 0/464 (0%) Strand=Plus/Plus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 |||||||| ||||| |||||||| ||||| ||||| || ||||| || || | || | | Sbjct 5444 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATACCTAAG 5503 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||||| | ||||| | ||||||||| || || || | ||| || |||||| Sbjct 5504 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCTACAACT 5563 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 || |||||||||||||| || || | || ||||||||||| || | || | || ||| Sbjct 5564 GACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAAGCTGTA 5623 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || || || ||||||||||| |||||||| |||| | ||||| Sbjct 5624 AACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 5683 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || ||| || |||||||| | | |||||||| || || || || || || || || Sbjct 5684 AATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 5743 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 || ||||||||||| || || || || ||| ||| || || ||||| ||||| Sbjct 5744 GTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTTGTTTCA 5803 Query 18192 CTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 18251 | || | || ||||| || | ||||||||||| | |||||| | ||||| ||| Sbjct 5804 CGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAAT 5863 Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATT 18295 || || |||||||| | ||| ||||| || ||||| | |||||| Sbjct 5864 ACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 215 bits (238), Expect = 2e-51 Identities = 260/351 (74%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 18470 ttCCCATTGTCGTCCCATGTAAGCTGC-GATGCCGATGAGAAAGTGGAACACAATGAGTT 18528 |||||| | || ||||||||| | || ||| || | || |||||| | || || | || Sbjct 8475 TTCCCACTCACGGCCCATGTAA-CAGCAGATACCTAAGAAGAAGTGGCAAACGATTAATT 8533 Query 18529 GATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGA 18588 | || || || ||||| |||||||||||||| || | || |||||||| |||||||||| Sbjct 8534 GGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGCTTCCCAAATTGGGTAGA 8593 Query 18589 AGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCAT 18648 |||| | |||||| |||||||||| |||| | || || | ||||||||||| || | Sbjct 8594 AGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGTGATGATGTTGTTACCGT 8653 Query 18649 AGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAA 18708 | | ||| | || || || |||||||| |||||||| |||||||| ||||||||||| | Sbjct 8654 ATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTCAACAGGAGGAGCAGCGA 8713 Query 18709 CAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAA 18768 ||||| || | ||| | | || || |||||||| | ||||||||| | || || | Sbjct 8714 TGAATGCGATGATGAATACAGAAGTAGCTGTTAAAAGAGTAGGGATCATGATAACACCGA 8773 Query 18769 ACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 |||| || | ||| | ||||| | ||| || | ||| || || |||| Sbjct 8774 ACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCACTCGCAGAAAC 8824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151313848437102