Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1134 526 3e-144 seq1186 300 2e-76 seq681 118 1e-21 >seq1134 Length=9887 Score = 526 bits (582), Expect = 3e-144 Identities = 725/1009 (72%), Gaps = 4/1009 (0%) Strand=Plus/Plus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | |||||||| || | || ||||| |||||||| ||||| || ||| || ||| Sbjct 6915 TATTAAAGAGCGTTACCACGAGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGT 6974 Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823 || || | |||| ||| ||||| | ||||||||| |||| ||| || ||||| ||| Sbjct 6975 TGGTCTTGAGCAGCCATCCACGCACGAATACCTTCATTTAATAAGATATTTTTTGTATAG 7034 Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 101883 || || || ||||| |||||||| || |||| ||| || || || ||||| ||||| || Sbjct 7035 AATGTTTCAAACTCAGGATCTTCGGCAGCTCGGATTTCCTGAGAAACAAAATCATAGGCT 7094 Query 101884 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGA 101943 | ||||| | ||| | ||||| | || || | ||| |||| ||||| |||| || Sbjct 7095 CTTAGGTTTAAAGCTAAGCCAATCACCCCAATTGCACTCATCCAAAGACCAGTAACTGGT 7154 Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 || || ||||| ||||| || ||||| | || ||| ||| || | ||| || || || Sbjct 7155 ACGAATAGCATGAAGAAGTGTAACCAGCGTTTGTTAGCAAAAGCTACACCGAAAATCTGT 7214 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 |||||||| | ||| || || |||||||| ||||| ||||| ||||||| | | ||| Sbjct 7215 GACCAGAATCTGTTAGCAGTTACCATTGAGTAAGTTTCTTCAGCTTGTGTTGGGTTGAAA 7274 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 || ||||||||| || |||||||||||| | | ||||| || ||||| ||||| Sbjct 7275 GCACGGAAAGTGTTAGCACCATCACCATCTTCGAATAATGTGTTTTCTACAGTTGCACCG 7334 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183 || ||||| | | | || | || | | ||| |||||||||||||| ||||||||| Sbjct 7335 TGAATTGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATGGG 7394 Query 102184 TTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACA 102243 || || |||||||| ||||| ||||| | ||| || | || | || || ||||||||| Sbjct 7395 TTAAGAGTCCAGTTGTGGAAACCCTGGAAGAATAGAATAAAACGGAAGATTGCTGCAACA 7454 Query 102244 CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTG 102303 ||||| || || |||||||||| || || || | ||| || || | || ||| Sbjct 7455 CCAAAACTTGGTGCGAAGAACCAACCTGATTGACCTAAAGGGTAAATTAAGAATACAGAT 7514 Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAATTAA 102362 || || |||| || || | ||||| || || || ||||| ||||| || | | || Sbjct 7515 ACGAATACAGAAATTGGTGCTGAGAAAGCGATTGCGTTGTAAGGACGTAAGTTTACAGAA 7574 Query 102363 CCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGC 102422 | || | || |||||||| | ||||||||| || | |||| |||||||| | ||| Sbjct 7575 -CGCGCAATTTCAAATTGACGTAACATGAAACCGATTAAACCAAACGCACCGTGTAAAGC 7633 Query 102423 CACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGG 102482 || |||| ||| | || || ||||||| ||| | ||||| ||||| |||||||| Sbjct 7634 TACGAAAGGCCATAAACCACCTAGTTGGAACCAACGTGTTAAATCACCTTGCGCTTCAGG 7693 Query 102483 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGT 102542 |||||| | | |||||| || || |||||| || |||||| ||||| ||||| ||||| Sbjct 7694 ACCCCATACAAAAAGAAGTGAGTGGCCCATACTGTTAGCAGGAGTTGAAACAGCTGCTGT 7753 Query 102543 AAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGC 102602 | ||| ||| |||||| | |||| || || | || || || ||||| |||||| | Sbjct 7754 TAAGAAGTTACAACCTTCTAAGTAAGAAGTTGCTAAACCATGTGTGTACCATGAAGTAAC 7813 Query 102603 AAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCA-GTGGGAAAAAGAAGTA 102661 ||| || || ||||| | ||| || || | ||| | |||||| |||||| || || || Sbjct 7814 AAATGTTGTACCAGTTAACCAACCACCTAATGCAAAGTAAGCACATGGGAATAATAA-TA 7872 Query 102662 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATC 102710 || |||||||| || || || || || ||| | | ||||||||| Sbjct 7873 AACCTGACCAACCTACGAATACGAAACGGTCTTGACGTAACCAGTCATC 7921 >seq1186 Length=9024 Score = 300 bits (332), Expect = 2e-76 Identities = 337/458 (74%), Gaps = 2/458 (0%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||| ||| | ||| || |||||||||||||||||||| || ||||| || |||||||| | Sbjct 5442 CAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATACCTA 5501 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 ||| ||||||| | ||| ||||| ||||| || |||||||| ||| || | | Sbjct 5502 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCTACAA 5561 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGT-GCTAACACCAAGTGCG 103348 ||||||||||||||||| ||||| | |||||| ||||| || | ||| ||| | || Sbjct 5562 CTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAA-ACCTAAAGCT 5620 Query 103349 GTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTG 103408 || ||||| |||| || ||||| | |||||| Sbjct 5621 GTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTG 5680 Query 103409 TTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTG 103468 |||||||| |||||||||||||| |||||||| |||||||| || || |||||||||||| Sbjct 5681 TTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTG 5740 Query 103469 TATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTC 103528 || || ||||| ||||| ||||||||||||||| ||| ||||| ||||||| || Sbjct 5741 TAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTTGTT 5800 Query 103529 TCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCG 103588 ||||| | | || || || || | |||||||||||||| ||| | ||||||||| Sbjct 5801 TCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCA 5860 Query 103589 AAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCAT 103626 || || |||||||| || | ||||||||| |||||||| Sbjct 5861 AATACACCAGCAACACCTAACATGTGGAATGGGTGCAT 5898 Score = 257 bits (284), Expect = 2e-63 Identities = 275/361 (76%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 103798 ACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAA 103857 |||| | || |||||||||||||| ||||| || |||| || | || ||||||| | Sbjct 8463 ACGGAAAGATAATTCCCACTCACGGCCCATGTAACAGCAGATACCTAAGAAGAAGTGGCA 8522 Query 103858 TACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCA 103917 || | | |||| ||||||||||||| || | |||||| |||||||| ||||||||||| Sbjct 8523 AACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGCTTCCCA 8582 Query 103918 AATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGAT 103977 ||| || |||||||| | ||| || ||||| || | || | ||| ||||||| |||||| Sbjct 8583 AATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGTGATGAT 8642 Query 103978 GTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGG 104037 |||||||||||| | | |||||||| || || ||||| || || ||||| || || || Sbjct 8643 GTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTCAACAGG 8702 Query 104038 AGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCA 104096 ||| || || | ||| || | |||||| |||| || || | || ||||| ||||||| Sbjct 8703 AGGAGCAGCGATGAATGCGATGATGAATACAGA-AGTAGCTGTTAAAAGAGTAGGGATCA 8761 Query 104097 TCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGA 104156 | | |||||||||||||| | || | |||||| | || || || | ||||||||||| Sbjct 8762 TGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCACTCGCAGA 8821 Query 104157 A 104157 | Sbjct 8822 A 8822 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 103680 TACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTG 103739 |||| ||||||||| | || ||||| ||||||||||| | ||||||| | |||||| | Sbjct 8058 TACCTAAAGGCATACCGTCAGAGAAAGAACCTTGACCGATAGGGTAGATGATGAATACAG 8117 Query 103740 CGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCAT 103791 | | ||||| || || ||||||||||| || ||| |||||| || ||||| Sbjct 8118 CAGTTGCAGCAGCTACTGGAGCAGAGTAAGCAACAGCGATCCATGGACGCAT 8169 >seq681 Length=27805 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 103457 GCTACGATGTTGTATGTCTCT----TCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGA 103512 |||||||||||||| || ||| |||||||| ||||||||||||||| ||| || Sbjct 3089 GCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTGA 3148 Query 103513 TTCAGTTTCAGTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACT 103572 ||| | ||||| || ||||| | | || || || || | |||||||||| ||| Sbjct 3149 TTCGTTATCAGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCAGA 3208 Query 103573 GAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCA 103625 ||| | |||||||||||| || |||||||| || | ||||||||| | | ||| Sbjct 3209 GAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAACGTGAGCA 3261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633493541375640