Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1186 293 7e-75 seq681 80.6 8e-11 >seq1186 Length=9024 Score = 293 bits (324), Expect = 7e-75 Identities = 347/470 (74%), Gaps = 0/470 (0%) Strand=Plus/Plus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || || | ||| || ||||||||||| ||||| || |||||||| ||||| | Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 || | ||| |||||||| | ||||||||||| ||||| | || | || | || || Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | || ||||| |||||||| || || |||||||||||||| || || | || | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAA 5617 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 || | ||||||||||| |||||| ||||| ||||| | ||||| || | ||| || Sbjct 5618 GCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 5677 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||| ||||||||||| | |||||||| || ||||| ||||| || || Sbjct 5678 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 5737 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 |||||||| ||||| |||||||| |||||||||||| ||| ||| | | |||||| Sbjct 5738 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 5797 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || ||||| || | || || || || | |||||||||||| ||||| || ||| Sbjct 5798 GTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCA 5857 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATT 21931 |||||||| || || ||||| | |||||| || || ||||| | ||||| Sbjct 5858 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 188 bits (208), Expect = 2e-43 Identities = 252/349 (72%), Gaps = 1/349 (0%) Strand=Plus/Plus Query 22096 GATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATA 22155 || || ||| ||||||||| || ||||||||| ||| || | || ||||||| | | Sbjct 8466 GAAAGATAA-TTCCCACTCACGGCCCATGTAACAGCAGATACCTAAGAAGAAGTGGCAAA 8524 Query 22156 CGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAA 22215 || | | |||| | ||||| |||||||| | ||| || ||||| | ||| |||||||||| Sbjct 8525 CGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGCTTCCCAAA 8584 Query 22216 TTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGT 22275 ||||||||||||||| ||||| || ||| | || | || || || | ||||||| Sbjct 8585 TTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGTGATGATGT 8644 Query 22276 TGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTG 22335 ||||||| || || | || |||| || || || ||||| ||||||||||||||||| | Sbjct 8645 TGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTCAACAGGAG 8704 Query 22336 GTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAA 22395 | || | | || ||||| || || || ||||| | | || || ||||| | Sbjct 8705 GAGCAGCGATGAATGCGATGATGAATACAGAAGTAGCTGTTAAAAGAGTAGGGATCATGA 8764 Query 22396 GGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGAGGTGACCCA 22444 || |||||||| || | || | |||||| | |||||| |||| ||| Sbjct 8765 TAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCA 8813 >seq681 Length=27805 Score = 80.6 bits (88), Expect = 8e-11 Identities = 117/165 (71%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 21753 GCAACAATATTGTAAGTCTCT----TCCTCTTGACCAAACTTGTAACCATAGTTCTGTGA 21808 || || || |||||||| ||| ||||||||||| |||||||||||| ||| ||| Sbjct 3089 GCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTGA 3148 Query 21809 AACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGA 21868 | | ||||| || ||||| || | || || || || | |||||||| ||||| Sbjct 3149 TTCGTTATCAGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCAGA 3208 Query 21869 GAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAA 21913 ||| || ||||| || || || || ||||| | |||||| || Sbjct 3209 GAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAA 3253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146203602154740