Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1134 473 1e-128 seq1186 331 1e-85 >seq1134 Length=9887 Score = 473 bits (524), Expect = 1e-128 Identities = 734/1047 (70%), Gaps = 31/1047 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| |||||||| | ||||| |||||||| |||||||| ||| || || ||||| Sbjct 6917 TTAAAGAGCGTTACCACGAGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGTTG 6976 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATT-AAGAAGAATGTTCTTCGTATAGA 122984 ||| || | |||||| || | || |||||||| || |||| | || || ||||||| Sbjct 6977 GTCTTGAGCAGCCATCCACGCACGAATACCTTCATTTAATAAGA-TATTTTTTGTATAGA 7035 Query 122985 AAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTC 123044 | || || ||||| || ||||| || |||| || || ||||| ||||| || || |||| Sbjct 7036 ATGTTTCAAACTCAGGATCTTCGGCAGCTCGGATTTCCTGAGAAACAAAATCATAGGCTC 7095 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 | ||||| | |||| || | | || || | |||| | ||| | || || | Sbjct 7096 TTAGGTTTAAAGCTAAGCCAATCACCCCAATTGCACTCATCCAAAGACCAGTAACTGGTA 7155 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 |||| | ||| | ||||||||| | | |||||||| ||| || | ||| || ||||||| Sbjct 7156 CGAATAGCATGAAGAAGTGTAACCAGCGTTTGTTAGCAAAAGCTACACCGAAAATCTGTG 7215 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 ||||||||||||| || || | ||| ||||||||||| | ||||| || | ||| | Sbjct 7216 ACCAGAATCTGTTAGCAGTTACCATTGAGTAAGTTTCTTCAGCTTGTGTTGGGTTGAAAG 7275 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | |||||| ||| ||| ||| || |||| | |||| Sbjct 7276 CACGGAAAGTGTTAGC---------ACCATCACCAT------------CTTCGAATAATG 7314 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 |||| | || |||||||| ||||| ||||||| ||| || |||||| | || |||| Sbjct 7315 TGTTTTCTACAGTTGCACCGTGAATTGCACATAATAAAGCAGCACCTAAAACACCAGCAA 7374 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 ||||||||||||| ||||| || | || |||||||||||| || | ||||| ||| Sbjct 7375 CACCCATCATGTGGAATGGGTTAAGAGTCCAGTTGTGGAAACCCTGGAAGAATAGAATAA 7434 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTG 123464 |||| ||||||||||| ||||| || ||||||||||||||||| ||||||| | Sbjct 7435 AACGGAAGATTGCTGCAACACCAAAACTTGGTGCGAAGAACCAACCTGATTGACCTAAAG 7494 Query 123465 GATAGATCA-GAA---AGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCG 123520 | || || | ||| |||| | ||| || | || || ||||| |||| |||| Sbjct 7495 GGTAAATTAAGAATACAGATAC----GAATACAGAAATTGGTGCTGAGAAAGCGATTGCG 7550 Query 123521 TTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATG 123580 |||||||| | | | |||| | || || |||||||| | | ||||||||| || Sbjct 7551 TTGTAAGGACGTAAGTTTACAGAACGCGCAATTTCAAATTGACGTAACATGAAACCGATT 7610 Query 123581 AGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGA 123640 | ||||| | || ||||| ||||| || ||||| ||| || ||||| |||||||| Sbjct 7611 AAACCAAACGCACCGTGTAAAGCTACGAAAGGCCATAAACCACCTAGTTGGAACCAACGT 7670 Query 123641 ACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCA 123700 || ||||| |||||||| ||||| | || | || || ||||| || | Sbjct 7671 GTTAAATCACCTTGCGCTTCAGGACCCCATACAAAAAGAAGTGAGTGGCCCATACTGTTA 7730 Query 123701 CCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATA 123760 |||| || || || ||||||||||||||||| || || | || |||| ||| | | Sbjct 7731 GCAGGAGTTGAAACAGCTGCTGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTTGCTAAA 7790 Query 123761 CCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGA 123820 |||||||| |||||||| ||||| || || || || ||||||||||| | || | Sbjct 7791 CCATGTGTGTACCATGAAGTAACAAATGTTGTACCAGTTAACCAACCACCTAATGCAAAG 7850 Query 123821 TACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 || ||||| || | | ||| | ||| ||||| |||| |||||| ||||| ||| | Sbjct 7851 TAAGCACATGGGAATAATAATAAACCTGACCAACCTACGAATACGAAACGGTCTTGACGT 7910 Query 123881 AACCAGTCGTCAAGAACATCAAACCAA 123907 |||||||| || |||| |||||| Sbjct 7911 AACCAGTCATCTGCGTCATCGAACCAA 7937 >seq1186 Length=9024 Score = 331 bits (366), Expect = 1e-85 Identities = 351/463 (76%), Gaps = 0/463 (0%) Strand=Plus/Plus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| |||| |||| |||||| ||||||||||| || || | ||||||||| || |||||| Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || ||||| || | ||| | | ||| |||| || | | || | || || Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 |||||||| ||||| |||||||| || || |||||||| ||||| || | | ||| | | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAA 5617 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | || ||||| | ||||||||| || || | |||| ||||||||| | | ||| Sbjct 5618 GCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 5677 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 |||||||||||||| || |||||||| | ||||||||||||||||||||| ||||| ||| Sbjct 5678 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 5737 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 ||||| |||||||||||||| |||||||| |||||| ||| ||| || | || ||| Sbjct 5738 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 5797 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCT 124459 ||||| | ||||| |||||| || || | ||||| ||||| ||||||||||| || || Sbjct 5798 GTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCA 5857 Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTA 124502 || || | || || || ||| ||||||||| || ||||||| Sbjct 5858 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTA 5900 Score = 219 bits (242), Expect = 5e-52 Identities = 272/367 (74%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 124667 CCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAG 124726 ||||| | | | |||| |||||||| | |||||||| | ||||| | | |||| Sbjct 8458 CCTAAACGGAAAGATAATTCCCACTCACGGCCCATGTAACAGCAGATACCTAAGAAGAAG 8517 Query 124727 TGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCT 124786 ||| ||| | || || ||||||||||| || || ||||| || |||| || |||||| Sbjct 8518 TGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGCT 8577 Query 124787 TCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAG 124846 ||||| |||||||||||||||| ||||| ||||| |||| || | ||| ||||||| | Sbjct 8578 TCCCAAATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGTG 8637 Query 124847 ATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCG 124906 |||||||||||||| ||||| || ||||| | ||||| || | ||| || ||||| || Sbjct 8638 ATGATGTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTCA 8697 Query 124907 ACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTA-AGCATG 124964 |||||||| || || || ||||| | |||||| ||| | | ||||| | | || | | Sbjct 8698 ACAGGAGGAGCAGCGATGAATGCGATGATGAATACA-GAAGTAGCTGTTAAAAGAGTA-G 8755 Query 124965 GAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTTTGTTGATGTTACCCACT 125024 | ||||| | |||||| |||||||| | || | | ||| | || || || | ||||| Sbjct 8756 GGATCATGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCACT 8815 Query 125025 CACAGAA 125031 | ||||| Sbjct 8816 CGCAGAA 8822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578980067463160