Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1134 455 4e-123 seq1186 365 6e-96 seq681 114 2e-20 >seq1134 Length=9887 Score = 455 bits (504), Expect = 4e-123 Identities = 669/943 (71%), Gaps = 8/943 (1%) Strand=Plus/Plus Query 23435 TTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATT 23494 ||||||||||||||| || |||||| |||| | || | || || || ||||| Sbjct 6965 TTCGTGTGGTTGGTCTTGAGCAGCCATCCACGCACGAATACCTTCATTTAATAAGATATT 7024 Query 23495 TTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAA 23554 ||| || ||||| || ||| || | |||||| ||||| || || || ||| ||||| Sbjct 7025 TTTTGTATAGAATGTTTCAAACTCAGGATCTTCGGCAGCTCGGATTTCCTGAGAAACAAA 7084 Query 23555 ATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACC 23614 |||||| || | || || | ||| | ||||| | ||||| | | | ||||||||| Sbjct 7085 ATCATAGGCTCTTAGGTTTAAAGCTAAGCCAATCACCCCAATTGCACTCATCCAAAGACC 7144 Query 23615 CATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCC 23674 | || || || || | ||| |||||||| ||||| || || || ||| || || || Sbjct 7145 AGTAACTGGTACGAATAGCATGAAGAAGTGTAACCAGCGTTTGTTAGCAAAAGCTACACC 7204 Query 23675 GAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGT 23734 ||| || |||||||| || | || || || ||||| || || || || || | || || Sbjct 7205 GAAAATCTGTGACCAGAATCTGTTAGCAGTTACCATTGAGTAAGTTTCTTCAGCTTGTGT 7264 Query 23735 GGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGAC 23794 | | ||| || |||||||| || || |||||||| | | ||| || || || Sbjct 7265 TGGGTTGAAAGCACGGAAAGTGTTAGCACCATCACCATCTTCGAATAATGTGTTTTCTAC 7324 Query 23795 AGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCAT 23854 ||| | || ||||| ||| | | | || | || | | ||||||||| |||||||| Sbjct 7325 AGTTGCACCGTGAATTGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCAT 7384 Query 23855 ATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAAT 23914 ||||| ||||| || |||||||| || || ||||||| ||| |||| || | ||| || Sbjct 7385 GTGGAATGGGTTAAGAGTCCAGTTGTGGAAACCCTGGAAGAATAGAATAAAACGGAAGAT 7444 Query 23915 CGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAG 23974 || |||||||| ||||| || || ||||||||| ||| || || ||||| || || | Sbjct 7445 TGCTGCAACACCAAAACTTGGTGCGAAGAACCAACCTGATTGACCTAAAGGGTAAATTAA 7504 Query 23975 GAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACG--- 24031 ||||||||| |||||||||| ||| || | || ||||| || || ||||| ||||| Sbjct 7505 GAATACAGATACGAATACAGAAATTGGTGCTGAGAAAGCGATTGCGTTGTAAGGACGTAA 7564 Query 24032 GATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGC 24091 | || || ||| || | |||||| ||||||||||| ||||| || | |||| || Sbjct 7565 GTTTACA---GAACGCGCAATTTCAAATTGACGTAACATGAAACCGATTAAACCAAACGC 7621 Query 24092 ACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCC 24151 |||||| | ||| || || | ||| | || || ||||||| ||| ||| || || || Sbjct 7622 ACCGTGTAAAGCTACGAAAGGCCATAAACCACCTAGTTGGAACCAACGTGTTAAATCACC 7681 Query 24152 TTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGA 24211 ||| | ||||||||||| | | |||||| || || |||||| || |||||| || || Sbjct 7682 TTGCGCTTCAGGACCCCATACAAAAAGAAGTGAGTGGCCCATACTGTTAGCAGGAGTTGA 7741 Query 24212 GACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTA 24271 |||||||| || | |||||| ||| || | || ||| | || | ||||| ||||| Sbjct 7742 AACAGCTGCTGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTTGCTAAACCATGTGTGTA 7801 Query 24272 CCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA-GTGG 24330 ||| |||||||| | ||| ||||| | |||||| || | |||| |||||| ||| Sbjct 7802 CCATGAAGTAACAAATGTTGTACCAGTTAACCAACCACCTAATGCAAAGTAAGCACATGG 7861 Query 24331 GAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATC 24373 ||| || || | || |||||||| || || || || || || Sbjct 7862 GAATAA-TAATAAACCTGACCAACCTACGAATACGAAACGGTC 7903 >seq1186 Length=9024 Score = 365 bits (404), Expect = 6e-96 Identities = 363/470 (77%), Gaps = 0/470 (0%) Strand=Plus/Plus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| ||| ||| | || | || || || || ||||| | ||| || || ||||| | Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 || | ||||||||||| | ||| ||||||||||| | |||||||| || || || Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | || ||||| ||||||||||| ||||| | ||||||||||| || |||| ||| | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAA 5617 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || || ||||| || | ||||| ||||| ||||| | ||||||||| || ||||| ||| Sbjct 5618 GCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 5677 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 |||||||||||||| ||||||||||| |||||||| ||||| || ||||| || |||||| Sbjct 5678 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 5737 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 ||||| || |||||||||||||||||||| |||||| ||| ||| || ||||||| Sbjct 5738 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 5797 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || ||||||| | ||||| || || | ||||||||||| ||||| | || ||| Sbjct 5798 GTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCA 5857 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATT 27194 || ||||| ||||||||||| | ||||||||| |||||||| | |||||| Sbjct 5858 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 279 bits (308), Expect = 7e-70 Identities = 284/368 (77%), Gaps = 2/368 (1%) Strand=Plus/Plus Query 27351 ACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAA 27410 ||||||||| | || | |||||||||||| ||||| ||| |||| || | | ||| Sbjct 8457 ACCTAAACGGAAAGATAATTCCCACTCACGGCCCATGTAACAGCAGATACCTAAGAAGAA 8516 Query 27411 GTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGC 27470 |||| | || | | |||| ||||||||||||| || |||||||| || || || ||||| Sbjct 8517 GTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGC 8576 Query 27471 TTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGA 27530 |||||| |||||||||||||| | |||||| || || || | |||| ||| ||||||| Sbjct 8577 TTCCCAAATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGT 8636 Query 27531 AATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATC 27590 ||||||||||| || || | | |||||||| ||| || ||||| ||||| || || || Sbjct 8637 GATGATGTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTC 8696 Query 27591 GACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTG 27649 || || || || ||||||||||||| ||||| |||| ||| |||| ||| || || | Sbjct 8697 AACAGGAGGAGCAGCGATGAATGCGATGATGAATACAGA-AGTAGCTGTTAAAAGAGTAG 8755 Query 27650 GGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTGATGTCACCCACT 27709 ||||||| | |||||||||||||| | || |||||||| | ||| || || | ||||| Sbjct 8756 GGATCATGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCACT 8815 Query 27710 CACAGAAA 27717 | |||||| Sbjct 8816 CGCAGAAA 8823 Score = 122 bits (134), Expect = 1e-22 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 27239 TACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTG 27298 |||| | ||||||| | || ||||||||||||||||||| ||| |||| || |||||| | Sbjct 8058 TACCTAAAGGCATACCGTCAGAGAAAGAACCTTGACCGATAGGGTAGATGATGAATACAG 8117 Query 27299 CACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCAT 27350 || | |||||||| ||||||||||| || || ||| ||||||||||||||| Sbjct 8118 CAGTTGCAGCAGCTACTGGAGCAGAGTAAGCAACAGCGATCCATGGACGCAT 8169 >seq681 Length=27805 Score = 114 bits (126), Expect = 2e-20 Identities = 130/174 (75%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 27015 TGCGACGATGTTGTAGGTCTCT----TCTTCTTGACCGAACTTATAACCATAGTTCTGTG 27070 ||| ||||||||||| || ||| || |||||||||||||| |||||| ||| || Sbjct 3088 TGCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTG 3147 Query 27071 ACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAG 27130 | || | ||||| || ||||||| | ||||| || || | ||||||| |||| Sbjct 3148 ATTCGTTATCAGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCAG 3207 Query 27131 AGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCA 27184 |||| | || |||||||| || ||||||||||| | ||||||||||| | ||| Sbjct 3208 AGAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAACGTGAGCA 3261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665473328783560