Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq449 95.1 1e-14 seq7 93.3 5e-14 >seq449 Length=50303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 14330 GCAGACTTGAAGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAA 14389 || ||| || |||| || || || |||| ||| ||||| |||||| ||| | || Sbjct 36498 GCTGACCTGGAGCGATCCATCCCCAGCATGGTGGACGGTCTGAAGCCTGGCCAGCGCAA- 36556 Query 14390 GTGATG-TATGCT--TGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTG 14446 ||| ||| || |||||| | || |||||| || || ||||||| || ||| Sbjct 36557 --GATCCTATTCTCATGCTTCAAGCGCAACCTCAAGTCGGACATCAAGGTGGTGCAGCTG 36614 Query 14447 GCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGACACG 14506 || | ||||| | || | || ||||||||||| || || | ||| | | | ||| Sbjct 36615 GCAGGTTATGTGTCCGAGCACTCGGCGTACCACCACGGCGAGGCGTCCCTGTCCGCCACC 36674 Query 14507 ATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGT 14566 || | || ||||| | |||| ||| || |||||||| ||||| || | || | Sbjct 36675 ATCATCAACCTGGCACAGGACTTTGTGGGCTCCAACAACATCAACCTGCTGGTGCCCTCA 36734 Query 14567 GGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCT 14605 ||||| ||||| ||||| || |||||| ||||||||| Sbjct 36735 GGTCAGTTTGGCACGCGGCTGCAGGGTGGCAAGGATGCT 36773 >seq7 Length=421595 Score = 93.3 bits (102), Expect = 5e-14 Identities = 239/362 (66%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| | ||||| || || | ||||||||| ||| ||||| ||| | | Sbjct 312149 CCCCCAGCACATGCTGATGCGCGTGGCCGTGGGCATCCACAAGGATGACATCGATGCCGC 312208 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | | || ||| || ||||| | | ||||| ||||| | || |||||||| Sbjct 312209 CATCAACACGTACCACCTCATGTCTGAGCGCTGGTTCACGCACGCCTCCCCCACCCTCTT 312268 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| | || || || | || ||| ||||| |||||||| | |||| | || Sbjct 312269 CAACTCCGGCACCCCCCGCCCCCAGCTGTCCTCCTGCTTCCTGGTGTGTGCCAAGAACGA 312328 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 || ||| |||| ||||||| || || | ||||||||| ||||| |||| ||| || Sbjct 312329 TTCCATCGACGGCATCTATGACACGCTCAAGGAGTGTGCTGTGATCTCCAAGTCGGCCGG 312388 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACA 75508 || || || | |||||| | | | |||| ||||| || || || || Sbjct 312389 CGGCATCGGCCTCTCCATCCACAACATACGTGCCA--CCGGCTCGTACATCCGCGGCACC 312446 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| || | ||| || | || ||||| ||||| || || | ||| || || ||| Sbjct 312447 AACGGTACCTCCAACGGTGTTGTGCCCATGCTGCGCGTCTTCAATGACACTGCCCGGTAT 312506 Query 75569 GT 75570 || Sbjct 312507 GT 312508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550711115040