Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq1186 291 1e-73 >seq1186 Length=9024 Score = 291 bits (322), Expect = 1e-73 Identities = 345/466 (74%), Gaps = 1/466 (0%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| |||| |||||||||| ||||||||||| || || | ||||||||| || |||||| Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 |||||||| || | ||| | | |||| |||| || | | ||| | | || Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 8002 ACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATA 8061 |||||||| ||||| ||||| || ||||| | ||| || ||||| || | | ||| | | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAA 5617 Query 8062 GAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTG 8121 | || ||||||| |||||||||||| | | ||| | ||||||||| | | | | Sbjct 5618 GCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 5677 Query 8122 TTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATA 8181 ||||| || || || || ||||||||||| | ||||||||| || || ||||| || || Sbjct 5678 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 5737 Query 8182 TTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTT 8241 || || || |||||||||||||| ||||| |||||| ||| || || | ||||||| Sbjct 5738 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 5797 Query 8242 GTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCA 8301 || || | ||||| |||||| || ||||| |||||||||||||| ||| | ||| ||| Sbjct 5798 GTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCA 5857 Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCA-TAAGA 8346 || || | ||| || || ||| ||| ||||| || |||| ||||| Sbjct 5858 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGA 5903 Score = 208 bits (230), Expect = 9e-49 Identities = 268/367 (73%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 8508 ACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA-ATTCCAATAAGGA 8566 |||||| ||| | ||||| ||||||| | ||||||||| ||| | || || | | || Sbjct 8457 ACCTAAACGGAAAGATAATTCCCACTCACGGCCCATGTAA-CAGCAGATACCTAAGAAGA 8515 Query 8567 AGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAG 8626 ||||| | | | || || || ||||| ||||| || |||||||| || | | || | Sbjct 8516 AGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTG 8575 Query 8627 CTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAG 8686 |||||||||| || ||||||||||| || || ||||| || | || | |||||||||| Sbjct 8576 CTTCCCAAATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAG 8635 Query 8687 AGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATAT 8746 |||||||||||| || || | |||||||| | ||| || ||||| ||||| ||||| | Sbjct 8636 TGATGATGTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGT 8695 Query 8747 CGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAG 8806 | ||||| |||||||| || ||||| | ||| || || || ||| | ||| | || Sbjct 8696 CAACAGGAGGAGCAGCGATGAATGCGATGATGAATACAGAAGTAGCTGTTAAAAGAGTAG 8755 Query 8807 GAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCACT 8866 | ||||| | ||| || |||||||||| || | | ||| | ||| || | ||||| Sbjct 8756 GGATCATGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCACT 8815 Query 8867 CGCAAAA 8873 |||| || Sbjct 8816 CGCAGAA 8822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615842900256760