Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1134 443 2e-119 seq1186 361 6e-95 seq681 86.0 7e-12 >seq1134 Length=9887 Score = 443 bits (490), Expect = 2e-119 Identities = 717/1025 (70%), Gaps = 10/1025 (1%) Strand=Plus/Minus Query 167011 TGGTTTGATGTCCTCGATGACTGGCT---TAAAAGGGATCGTTTTGTTTTTGTTGGCTGG 167067 ||||| |||| | ||||||||| | | || || ||||| || || || || ||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAA---GACCGTTTCGTATTCGTAGGTTGG 7880 Query 167068 TCTGGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGAC 167126 || || || || || |||||| |||||| |||| | || |||||| | ||||| || Sbjct 7879 TCAGGT-TTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTAC 7821 Query 167127 TACTTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAA 167186 || || || || ||||| || ||||| | || | ||| | || ||| || Sbjct 7820 AACATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAA 7761 Query 167187 CTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCT 167246 ||| | || || || ||| ||||| || | |||||| || || | ||| || | Sbjct 7760 CTTCTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGT 7701 Query 167247 ATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGC 167306 ||||||||||||| | ||||| ||||| | ||| ||||||| || || | ||| | Sbjct 7700 ATGGGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCC 7641 Query 167307 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACT 167366 ||| || || | ||||| || |||| | | || ||||||||| | || || |||||| | Sbjct 7640 TTTCGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAAT 7581 Query 167367 TGCTCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG 167425 ||| || ||| | | ||||| ||||| || || |||||||| | || ||| ||| Sbjct 7580 TGCGCGTTCTGTAAACT-TACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTG 7522 Query 167426 TCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGT 167485 | ||||| || ||| | | || || | |||||| | |||||||| || || Sbjct 7521 TATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAA 7462 Query 167486 CCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGA 167545 || || || || || |||||||| || | || ||| |||| || ||||||||||||| Sbjct 7461 GTTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGA 7402 Query 167546 CACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTG 167605 | || || ||||| || ||||||||||| || ||| | | |||| ||| || | | || Sbjct 7401 CTCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 7342 Query 167606 CAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTT 167665 |||| || |||| || ||||| || || || | ||||||||||| || ||||||| Sbjct 7341 CAATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTT 7282 Query 167666 TTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGAT 167725 | || ||| | | || || | ||||| ||||| |||||||| || || ||| ||| Sbjct 7281 TCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGAT 7222 Query 167726 TCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGT 167785 ||||||| ||||| ||||| | ||||| |||||||||||| | || ||||| ||| Sbjct 7221 TCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGC 7162 Query 167786 TATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTA 167845 ||||||| || |||| || ||||||| | ||||| | ||||| | ||| | | Sbjct 7161 TATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAA 7102 Query 167846 ATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTG 167905 | || | || || ||||| |||||||| || ||| |||| || || ||||| ||||||| Sbjct 7101 ACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTG 7042 Query 167906 AAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTA 167965 |||| |||||||| ||||| ||| | | ||||||||| |||| || ||| | || || Sbjct 7041 AAACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTC 6982 Query 167966 TCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCAC 168025 || ||||| || || || || ||||| || ||||| | || || || ||||| | Sbjct 6981 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTC 6922 Query 168026 TATAA 168030 | ||| Sbjct 6921 TTTAA 6917 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186 |||| |||||||||||| || ||||| |||| ||||||| ||||||||||||||||||| Sbjct 6539 ATTCTTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGTAGGTTCAAG 6480 Query 18187 TCCTACCTGGGGAG 18200 |||||||||||||| Sbjct 6479 TCCTACCTGGGGAG 6466 >seq1186 Length=9024 Score = 361 bits (400), Expect = 6e-95 Identities = 370/483 (77%), Gaps = 0/483 (0%) Strand=Plus/Minus Query 166291 AATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTG 166350 ||||| | ||||| || ||||| ||| | || |||||||| ||||||||||| || Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 166351 TTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACC 166410 || ||||||||||| || || ||||||||| | | | || || ||||||| | Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 166411 GAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCC 166470 ||||| ||| |||||||||||||| |||||||||||||| |||||||||||||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 166471 GCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCC 166530 || || |||||||| |||||||| ||||||||||||||||||||||||||||| || || Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 166531 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTC 166590 || ||||||||| | ||||| ||||| ||||| | || ||||| || || | || | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 166591 TCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 166650 || || ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 166651 GGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTT 166710 |||||||| || ||||| ||||| || | | ||||| ||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 166711 ATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGAGTCCACTCCT 166770 |||||||| |||||||| ||||||||||| || ||| | ||| ||| ||| | || || Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAAGCTCCTTCT 5428 Query 166771 GTG 166773 ||| Sbjct 5427 GTG 5425 Score = 259 bits (286), Expect = 5e-64 Identities = 279/367 (76%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 |||||||| ||| | || || | |||||| | || |||||||||| ||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 165887 ||||| || ||||| || |||| ||| |||| |||||| |||| |||||||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 ||||| |||||||| || |||||||| || || ||||||| | | || |||||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 ||||||| ||||||| ||| | || | || ||||| || ||| |||||||||| || || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 |||||||| || || |||||||| ||| | || ||||||||||||| |||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | ||||||| | | || |||| |||||||| |||||||||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 166128 TCTAGGT 166134 | ||||| Sbjct 8463 TTTAGGT 8457 Score = 102 bits (112), Expect = 9e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 166135 ATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTC 166194 ||||||||||||||| |||||||||||| || ||||| |||||||| | ||| |||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 166195 CTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCC 166238 | | || ||| ||||||||||| ||||||||| | ||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCC 8066 >seq681 Length=27805 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 166309 TTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGA 166368 ||||| ||| | || |||||||| || || ||||| || || ||| ||||||| Sbjct 3253 TTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACGGT 3194 Query 166369 AGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGT 166428 || || ||||||||| | | | || || ||||| | |||||| ||| ||| Sbjct 3193 TCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTGGT 3134 Query 166429 TACAAGTTCGGACAAGAAGA----AGAAACATACAACATCGTAGC 166469 ||||||||||| ||||| || |||||| |||||||||||||| Sbjct 3133 TACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561230229485200