Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq408 170 3e-37 seq78 102 1e-16 seq7 96.9 5e-15 seq2016 84.2 3e-11 >seq408 Length=55535 Score = 170 bits (188), Expect = 3e-37 Identities = 308/449 (69%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 196154 GGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTG 196213 || || |||||| || | | || || |||||||| || || ||| | ||| || ||| Sbjct 33383 GGTATCGACTTCAATGCGTCAATCACGCGTGCACGCTTCGAGGAGCTGAACATGGACTTG 33442 Query 196214 TTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAG--- 196270 ||||||||||| |||| ||||| || | ||||| ||| || |||||||| ||| Sbjct 33443 TTTAGGAAGTGCATGGGCCCTGTGGAGAAGGTACTGTCTGATGCCAAGATGGACAAGGGC 33502 Query 196271 TCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAG 196330 || | | | || | || || || || || || || || || || ||| | || ||| Sbjct 33503 TCCA---TCCACGACGTGGTGCTGGTCGGTGGCTCCACGCGCATCCCCAAGGTGCAGCAG 33559 Query 196331 ATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCA 196390 ||||| |||||||||| || || | ||||| | |||||||| ||||| || Sbjct 33560 ATGCTGCAGGACTTCTTCAATGGCAAGGAGCTGAACAAGAGCATCAACCCAGATGAGGCG 33619 Query 196391 GTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTC 196450 || || |||||||| ||||| ||||| || || ||| | |||| || | | | || Sbjct 33620 GTGGCGTATGGTGCAGCCGTCCAGGCCGCGATCCTCACGGGTGCTGGCTCGAGCCATGTG 33679 Query 196451 CAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGT 196510 || || | ||||| || || || || ||| | |||||||| |||| || |||||||| Sbjct 33680 CAGGACTTGCTGCTGCTGGACGTGGCCCCCCTGTCCCTGGGGATTGAGACTGCGGGTGGG 33739 Query 196511 GTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTT 196570 || ||||| | || | ||||| || || || || |||||||| || |||| Sbjct 33740 GTCATGACGGTGCTCATCCCCCGCAACACCACCATCCCCACCAAGAAGGAGCAGATCTTC 33799 Query 196571 TCAACGTATTCCGATAATCAACCAGGTGT 196599 || |||||| | || || || || || || Sbjct 33800 TCTACGTATGCGGACAACCAGCCGGGCGT 33828 Score = 127 bits (140), Expect = 3e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 || || || || ||||| ||||| || || ||||| ||| | |||||||| || ||||| Sbjct 31636 TGCGTGGGCGTGTGGCAGAATGACCGAGTGGAGATCATCGCCAATGACCAGGGCAACCGC 31695 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || || || ||||||||||| | ||| || ||| | || ||||| || || Sbjct 31696 ACCACGCCCTCCTATGTGGCCTTTACAGACACTGAGCGCCTCATCGGCGATGCTGCCAAG 31755 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGC 195511 || || || |||||||| | || || |||||||| || ||||| || ||||| ||| Sbjct 31756 AACCAAGTGGCCATGAACCCCAAGAACACAGTCTTTGATGCCAAGCGCCTCATTGGCCGC 31815 Query 195512 AAGTT 195516 ||||| Sbjct 31816 AAGTT 31820 Score = 113 bits (124), Expect = 6e-20 Identities = 176/250 (70%), Gaps = 9/250 (4%) Strand=Plus/Plus Query 195747 AACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCA 195806 ||| |||||| || |||||||| | || || || || || | || | || |||| Sbjct 32696 AACCACAGGCCACCAAGGACGCCGGCGCGATCGCAGGCCTGGAGGTGCTGCGCATCATCA 32755 Query 195807 ATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACG-----AAG- 195860 | || || || || || || || || || |||||||||||||| ||| | ||| Sbjct 32756 ACGAGCCCACTGCTGCAGCCATCGCGTACGGTCTGGACAAGAAGCAGGCGGGCGTGAAGC 32815 Query 195861 ATAAA---AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCA 195917 || | ||||| | ||||| ||||| |||||||| || ||||||||||| ||||| Sbjct 32816 ATGAGCGCAATGTGCTCATCTTCGATCTGGGTGGTGGCACCTTTGATGTCTCCCTTCTGT 32875 Query 195918 ATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTG 195977 |||||| | || || || || || ||||| || || ||||| || || || ||||||| Sbjct 32876 CTATTGATGAGGGCATCTTTGAGGTCAAGGCCACAGCAGGTGACACCCACCTGGGTGGTG 32935 Query 195978 AAGATTTCGA 195987 | || || || Sbjct 32936 AGGACTTTGA 32945 >seq78 Length=180426 Score = 102 bits (112), Expect = 1e-16 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732 || ||||| | || ||| | || || || ||||| || || || || || ||||| Sbjct 21337 GGCATTCCCCCCGCGCCCCGTGGCGTGCCCCAGATCAACGTGGTGTTTGACATTGACGCC 21278 Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCT-GAA-AAGATTG 196790 || || || || ||||| | |||||||||||| | | |||| || ||| ||||| Sbjct 21277 AACGGCATCCTCAACGTGTCTGCTGAGGACAAGACGACCGGCA--TCAAGAACAAGATCA 21220 Query 196791 TGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATG 196850 ||| || ||||||||||| || || || ||||| || ||||| || ||||| || || | Sbjct 21219 CGATCACGAATGACAAGGGCCGCCTGTCCAAGGACGAGATTGAGCGCATGGTGCAGGAGG 21160 Query 196851 CGGAAAAGTACAGGGAAGAAGACGAGG 196877 | || ||||||| || ||| || |||| Sbjct 21159 CTGAGAAGTACAAGGCAGACGATGAGG 21133 >seq7 Length=421595 Score = 96.9 bits (106), Expect = 5e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 78644 GAGACCGGCACCCCGTATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAG 78703 ||||| |||| |||||| ||||| ||||| ||| || ||| | ||||||||||| || Sbjct 313300 GAGACGGGCAACCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCTAACCAGCAG 313359 Query 78704 AACCTAGGTGTCATCAAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACACGGATAAG 78763 ||||| || |||||| |||| ||||| ||||| || || |||| |||||| || Sbjct 313360 AACCTGGGGACCATCAAGTGCTCCAACCTGTGCACTGAGATCGTGGAGTACACGAGCGAG 313419 Query 78764 AATGAAACAGCTGTATGTAATCTAGGGTCTATCGCTCTACC 78804 | || || || || || || || | ||| ||||| || || Sbjct 313420 GACGAGACTGCAGTGTGCAACCTGGCGTCCATCGCGCTGCC 313460 >seq2016 Length=2168 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| ||||||||||| ||| Sbjct 1819 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCA 1760 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || || ||| |||| ||||| || || ||||| || Sbjct 1759 GACACCATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGG 1716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657841570431760