Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1186 293 7e-75 seq681 80.6 8e-11 >seq1186 Length=9024 Score = 293 bits (324), Expect = 7e-75 Identities = 347/470 (74%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 41756 AATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTG 41815 ||||| | ||||| || || |||||| | ||||| || || ||||||||||| || Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 41816 TTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAG 41875 ||||| |||||||||||| | || || || || | || ||||| || |||||| | Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 41876 GTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCT 41935 | ||| ||| |||||||||||| |||||||| ||||| |||||||| || || ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 41936 GCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGT 41995 || ||||| || |||||||| | ||||||||||| ||| || || || || ||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 41996 CTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTG 42055 | || ||||| | ||||| ||||| |||||| ||||||||||| | || | || | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 42056 TCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGAT 42115 || || |||||||||||||| || || |||||||| ||||| || | ||| || | Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 42116 GGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTG 42175 || | || | ||||| ||||||||||| | |||||||| ||| | || | ||||| Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 42176 ATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATCCGTGGA 42225 |||||||| || ||||| ||||||||||| || ||| | || || || || Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 188 bits (208), Expect = 2e-43 Identities = 252/349 (72%), Gaps = 1/349 (0%) Strand=Plus/Minus Query 41243 TGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCG 41302 ||| |||| |||||| | |||||| | || | || |||||||| || | ||||| || Sbjct 8813 TGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCT 8754 Query 41303 TGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGAC 41362 || | | ||||| || || || ||||| || | | || || ||||||||| Sbjct 8753 ACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCTCCTGTTGAC 8694 Query 41363 ATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCA 41422 |||||||| ||||| || || || |||| || | || || |||||||||||||| | Sbjct 8693 ATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAACATCATCACT 8634 Query 41423 GGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 41482 || || || | || | ||| || ||||| ||||||||||||||||||||||||| Sbjct 8633 GGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATTTGGGAAGCA 8574 Query 41483 GCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTC 41542 ||| | ||||| || ||| | |||||||| ||||| | |||| | | ||| | ||||||| Sbjct 8573 GCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTC 8514 Query 41543 CTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATC 41591 || | || ||| ||||||||| || ||||||||| ||| || || Sbjct 8513 TTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAA-TTATCTTTC 8466 >seq681 Length=27805 Score = 80.6 bits (88), Expect = 8e-11 Identities = 117/165 (71%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 41774 TTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGT 41833 || |||||| | ||||| || || || || ||||| || |||||||| |||||||| Sbjct 3253 TTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACGGT 3194 Query 41834 AGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGT 41893 | || || || || | || ||||| || ||||| | | ||| ||| |||| Sbjct 3193 TCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTGGT 3134 Query 41894 TACAAGTTTGGTCAAGAGGA----AGAGACTTACAATATTGTTGC 41934 |||||||| ||||||||||| ||| |||||||| || || || Sbjct 3133 TACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146210001962232