Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1186 275 2e-69 seq681 95.1 3e-15 >seq1186 Length=9024 Score = 275 bits (304), Expect = 2e-69 Identities = 366/504 (73%), Gaps = 6/504 (1%) Strand=Plus/Minus Query 42816 TCTTA-TGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCT 42874 ||||| |||| || ||||| ||| | |||||||| || ||||||||||| || || |||| Sbjct 5903 TCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCT 5844 Query 42875 CAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA- 42933 |||||||||| ||| | || || |||||| | | |||||||| |||||||||||| Sbjct 5843 CAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAAT 5784 Query 42934 -AGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGC 42992 ||| || | || ||||||||||||||||| || || ||||| ||||| || || || Sbjct 5783 CAGCTAACGCT--GGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGC 5726 Query 42993 GCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTT 43052 || ||||||||||| || | ||||||||||| || || || || || ||| || || Sbjct 5725 ACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATT 5666 Query 43053 GCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAG 43112 |||||||| | || |||||||| ||||| | |||||||| || || | || | Sbjct 5665 ACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATC 5606 Query 43113 TACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA 43172 |||||||| || ||||| || || || ||||| ||||| ||| |||| || ||| Sbjct 5605 AACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGG 5546 Query 43173 TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGAT 43232 || ||| | ||||||||||| || | || ||||| ||| | || | ||||| || Sbjct 5545 TCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAAT 5486 Query 43233 GCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTTACTCCCGT 43292 ||| || || || || || |||||||| || || | || || || || | | || | || Sbjct 5485 GCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAAGCTCCTTCTGT 5426 Query 43293 G-GCACTTACTGCTCCTTCTATTG 43315 | | |||| | || || ||||| Sbjct 5425 GAACGCTTAATTCTTTTTTTATTG 5402 Score = 172 bits (190), Expect = 2e-38 Identities = 261/369 (71%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || | ||| | ||||| ||| | |||||| | || | || ||||| Sbjct 8831 TGGGCTCGTTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTC 8772 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATTGTCGCTTTCAT 42398 ||||| | ||||| || ||| | | ||||| | ||| || || |||| ||||| Sbjct 8771 GGTGTTATCATGATCCCTACTCTTTTAACAGCTACTTC-TGTATTCATCATCGCATTCAT 8713 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||| ||||| || ||||| ||||| || ||||| || || ||||| || | | || Sbjct 8712 CGCTGCTCCTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATA 8653 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || |||||||||||| ||||||| || | |||| |||||| || || |||| || Sbjct 8652 CGGTAACAACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTT 8593 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | |||||||| ||| | ||||| || || ||||| || Sbjct 8592 CTACCCAATTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCA 8533 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 | |||| | ||||||| | | ||||||| || |||| |||| || || |||||| | Sbjct 8532 ATTAATCGTTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATT 8473 Query 42639 TTCGTACCG 42647 || | ||| Sbjct 8472 ATCTTTCCG 8464 Score = 84.2 bits (92), Expect = 6e-12 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42654 GATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTT 42713 |||| | || |||||| ||||||||||||||| || || ||||| || ||||| || || Sbjct 8170 GATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATT 8111 Query 42714 CCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCT 42759 | | |||| || | || ||||||||||| || || || |||||| Sbjct 8110 CATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCT 8065 >seq681 Length=27805 Score = 95.1 bits (104), Expect = 3e-15 Identities = 123/168 (73%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 42829 TTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 ||||| ||| | |||||||| || || || ||||| || || ||||| || |||| ||| Sbjct 3253 TTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACGGT 3194 Query 42889 AGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGCCAAAATTATG 42946 | || || |||||| | | |||||||| ||||| |||||| ||| || | | Sbjct 3193 TCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCT--G 3136 Query 42947 GCTACAAGTTCGGTCAAGAGGA----GGAGACTTATAACATTGTTGCA 42990 | |||||||||||||||||||| || ||||| ||||| || ||| Sbjct 3135 GTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143528482623084