Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1186 210 6e-50 >seq1186 Length=9024 Score = 210 bits (232), Expect = 6e-50 Identities = 325/464 (70%), Gaps = 0/464 (0%) Strand=Plus/Plus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||||||| || || ||||| ||||| ||||| || ||||| || || | || | | Sbjct 5444 GAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATACCTAAG 5503 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| ||||| | | |||||||| || || || || | | ||||| ||| Sbjct 5504 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCTACAACT 5563 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 |||||||| ||||| || || |||| ||| || ||||| || | | ||| | || ||| Sbjct 5564 GACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAAGCTGTA 5623 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || | ||||| ||||||| ||| | ||||| || | ||||| ||| || Sbjct 5624 AACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 5683 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 || || || || || ||||| | |||||||| ||||||||||| || || || || Sbjct 5684 AATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 5743 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| || ||||| || ||| || ||| | | || || ||||| Sbjct 5744 GTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTTGTTTCA 5803 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || | || ||||| || || ||||||||||| | ||| | | ||||| || Sbjct 5804 CGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAAT 5863 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATT 26337 || ||||||||||| ||| |||||||||||||| | ||||| Sbjct 5864 ACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 174 bits (192), Expect = 5e-39 Identities = 233/319 (73%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 26543 CCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCC 26602 |||| ||||||||| | | || | ||| || || || || ||||||| ||||||||| Sbjct 8506 CCTAAGAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCA 8565 Query 26603 AGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACG 26662 || | | |||||||| || ||||| || |||| ||||| |||||||| | |||| Sbjct 8566 AGAGAAGCTGCTTCCCAAATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATA 8625 Query 26663 ACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATG 26722 || || || | || || ||||| ||||| | ||| || || |||||||||||||| || Sbjct 8626 ACAGCACCAGTGATGATGTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATA 8685 Query 26723 CCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACATGTAGTGGCTGC 26781 ||||| || || ||||| || || |||||||| || | || || ||| | ||| |||| Sbjct 8686 CCATCGATGTCAACAGGAGGAGCAGCGATGAATGCGATGATGAATACA-GAAGTAGCTGT 8744 Query 26782 GAGTA-AGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTAC 26840 | | || |||| ||||| | || |||||||| || | || | ||||||||||||| Sbjct 8745 TAAAAGAGTAGGG-ATCATGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAG 8803 Query 26841 TTGTAACCCACTCACAAAA 26859 || | |||||| || || Sbjct 8804 AAGTGATCCACTCGCAGAA 8822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147707556915360