Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq1186 361 6e-95 seq681 131 2e-25 >seq1186 Length=9024 Score = 361 bits (400), Expect = 6e-95 Identities = 362/470 (77%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 155491 AATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTT 155550 |||||| | |||||||| ||||||||| | || || || ||||| || ||||| || | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 155551 TTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAA 155610 ||||| ||||||||||||||||| || || ||||| ||||||||||||| ||||| | Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 155611 GAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCT 155670 || || ||| ||||||||||||||| ||||||||||||||||| ||||| || ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 155671 GCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGT 155730 || || || ||||| |||||| | |||||||| || || || ||||||||||| | Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 155731 CTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTG 155790 | ||||||||| | ||||| ||||| || || || || ||| || ||| | ||| | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 155791 TCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT 155850 ||||| ||||| |||||| | ||||| ||||||||||||||||| || |||||| || Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910 ||| || | || ||||| ||||| | ||||| ||| | |||||||| ||| Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 ||||| || ||||||||||||||||||||||| ||| | ||| ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 269 bits (298), Expect = 3e-67 Identities = 275/359 (77%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| ||||| | |||||| |||| ||||| | || ||||||||||||||||| | | Sbjct 8821 TCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATCA 8762 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| || | | ||| || | ||||| |||| ||||| ||||| |||| Sbjct 8761 TGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCTC 8702 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 |||| ||||| |||||||| ||||| || || ||||||| ||| | || |||||||||| Sbjct 8701 CTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAACA 8642 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 ||||| ||||||||||| |||||| || ||||| || ||| | |||||||| || |||| Sbjct 8641 TCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATTT 8582 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 |||||||||| ||||||| |||||||| ||||| |||||||||| |||| | | || | Sbjct 8581 GGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTT 8522 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGT 155328 ||||||| | | || ||| ||| || ||| |||||||| | |||| |||| Sbjct 8521 GCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCGT 8463 Score = 107 bits (118), Expect = 2e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 155335 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTC 155394 |||||||| |||||| |||||| |||||||| |||||| ||||||| ||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 155395 CTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 | | || ||| |||||||||||||||||||||| | |||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 131 bits (144), Expect = 2e-25 Identities = 133/173 (77%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 155501 TGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTA 155560 ||| | | ||||||||| | || || || ||||| |||||||| || | |||||||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 155561 TGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGA 155620 ||||||||||||| || || ||||| ||||||||||||| ||||| | || || | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 155621 ACTATGGTTACAAGTTCGGACAAGAAGA----AGAAACTTATAACATTGTTGC 155669 || ||||||||||||||| ||||| || ||||||||| ||||| || || Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584816682655480