Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq1186 309 9e-80 >seq1186 Length=9024 Score = 309 bits (342), Expect = 9e-80 Identities = 345/461 (75%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||||||||||||||||||| ||||||||||||||||| || |||||||| |||||| Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 |||| | | ||| | | ||||||||||| | || ||| | || |||| Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 || ||||||||||| ||||| || || || | ||| ||||||||||| |||| ||| | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACCTAAA 5617 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | |||| ||| || | | ||| || ||||| | | |||||||||| | ||| Sbjct 5618 GCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 5677 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||||||||| ||||| || |||| | |||||||||||||||||||||||||||| Sbjct 5678 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 5737 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 || ||||| || |||| ||||| ||||| || || ||| |||||| |||| || Sbjct 5738 TTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 5797 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 || || || || | || ||||| || | ||||||||||| | || || | |||| Sbjct 5798 GTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCA 5857 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCAT 40984 ||||| || || ||||| || | ||| |||||||||||||| Sbjct 5858 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCAT 5898 Score = 190 bits (210), Expect = 6e-44 Identities = 229/309 (74%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 41199 CCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCC 41258 |||| || ||||| | || || | ||| || || || |||||||||| ||||||||| Sbjct 8506 CCTAAGAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCA 8565 Query 41259 AGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACG 41318 || | | |||||||| ||||||||||| |||| ||||| |||||||| | || | Sbjct 8566 AGAGAAGCTGCTTCCCAAATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATA 8625 Query 41319 ACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATG 41378 ||||| |||| || || ||||| ||||| | ||| || || ||||| |||||||| || Sbjct 8626 ACAGCACCAGTGATGATGTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATA 8685 Query 41379 CCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGT 41437 ||||| || || ||||| || || ||||| || ||||| ||||| ||| | ||||| || Sbjct 8686 CCATCGATGTCAACAGGAGGAGCAGCGATGAATGCGATGATGAATACA-GAAGTAGCTGT 8744 Query 41438 TAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCT 41497 || | | || ||||| | ||||| |||||||| | ||||| ||||| || || Sbjct 8745 TAAAAGAGTAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGA 8804 Query 41498 AGTGACCCA 41506 ||||| ||| Sbjct 8805 AGTGATCCA 8813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143698077521622