Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq1186 325 4e-84 seq681 109 6e-19 >seq1186 Length=9024 Score = 325 bits (360), Expect = 4e-84 Identities = 359/474 (76%), Gaps = 8/474 (2%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||| ||| | ||| ||||||||||||||||||||||| || ||||| || ||||| Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 67413 CC-AAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GC 67468 || |||| || | ||| | |||||| |||||||| | || || |||| | Sbjct 5498 CCTAAGTTA-GCACGGTTGATGATGTCAGCCCAAGTGTTTAATAC---ACGACCTTGAGA 5553 Query 67469 GTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACC 67528 ||| || || || |||||||||||||| ||||| | |||||| ||||||||||| | ||| Sbjct 5554 GTCTACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAAACC 5613 Query 67529 CATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCT 67588 | || || ||||| || || || || || | ||||| | ||||||||| | | Sbjct 5614 TAAAGCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACG 5673 Query 67589 TGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAAC 67648 ||||||||||| || || || |||||||| || ||||| ||||| || || ||||| || Sbjct 5674 AGAGTTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTAC 5733 Query 67649 AATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 ||||||||||| ||||||||||| |||||||||||||| ||| ||| || | || Sbjct 5734 GATGTTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTC 5793 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 ||| ||||| | ||| | ||||||||| || | |||||||||||||| || | ||| Sbjct 5794 AGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGA 5853 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTT 67822 |||||| |||||||| || || || | ||| |||||||||||||| | ||| || Sbjct 5854 ACCACCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 205 bits (226), Expect = 1e-47 Identities = 263/360 (73%), Gaps = 6/360 (2%) Strand=Plus/Plus Query 67979 ACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAA 68038 ||| | |||| |||| | |||||||| ||| || ||| ||| || | | ||| Sbjct 8457 ACCTAAACGGAAAGATAATTCCCACTCACGGCCCATGTAACAGCAGATACCTAAGAAGAA 8516 Query 68039 GTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGC 68098 |||| | || | | |||| |||| ||||| || || |||||||| || |||| ||||| Sbjct 8517 GTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGCTGC 8576 Query 68099 TTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGA 68158 |||||| || || |||||||| | |||||| ||||| || |||| | ||||||||||| Sbjct 8577 TTCCCAAATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACCAGT 8636 Query 68159 AATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATC 68218 ||||||||||||||||| | | ||||| | ||| || || | |||||||||||| || Sbjct 8637 GATGATGTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATACCATCGATGTC 8696 Query 68219 AACTGGAGGTGCTGCAATGAATGCAATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCA 68275 ||| ||||| || || |||||||| |||||||| |||| |||| | || || Sbjct 8697 AACAGGAGGAGCAGCGATGAATGCGATGATGAATACAGAAGTAGCTGTTAAAAG--AG-T 8753 Query 68276 AGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCAACTGAGGTGACCCA 68335 ||| ||||| | |||||||||||||| | || | || || ||| || |||| ||| Sbjct 8754 AGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCCA 8813 Score = 107 bits (118), Expect = 2e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 67867 TACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAG 67926 |||| | |||||| |||||||||||||||||||||||| ||| |||| | ||| |||| Sbjct 8058 TACCTAAAGGCATACCGTCAGAGAAAGAACCTTGACCGATAGGGTAGATGATGAATACAG 8117 Query 67927 CGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCAT 67978 | ||| |||| |||||||||||||| || ||| |||||| |||||||| Sbjct 8118 CAGTTGCAGCAGCTACTGGAGCAGAGTAAGCAACAGCGATCCATGGACGCAT 8169 >seq681 Length=27805 Score = 109 bits (120), Expect = 6e-19 Identities = 128/173 (74%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 67644 GCAACAATGTTGTAAGTCTCT----TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGA 67699 || || ||||||||||| ||| || ||||| |||||||||||||| ||| ||| Sbjct 3089 GCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTGA 3148 Query 67700 CTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACT 67759 || | ||||| ||||| | ||| | ||||||||| || | |||||||||| ||| Sbjct 3149 TTCGTTATCAGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCAGA 3208 Query 67760 AAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCA 67812 || | |||||||||||| ||||| || || || | ||| ||||| | | ||| Sbjct 3209 GAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAACGTGAGCA 3261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566929249034280