Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1134 531 6e-146 seq1186 329 4e-85 seq681 105 8e-18 >seq1134 Length=9887 Score = 531 bits (588), Expect = 6e-146 Identities = 736/1027 (72%), Gaps = 10/1027 (1%) Strand=Plus/Plus Query 66585 TATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGT 66644 |||||||| || |||||||| || | |||||||| |||||||| || ||| || ||| Sbjct 6915 TATTAAAGAGCGTTACCACGAGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGT 6974 Query 66645 TGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAG 66704 || || || |||| ||| ||||||| ||||||||| |||| || || ||||| ||| Sbjct 6975 TGGTCTTGAGCAGCCATCCACGCACGAATACCTTCATTTAATAAGATATTTTTTGTATAG 7034 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || || || ||||| || ||||| || |||| ||| || || || ||||| ||||| || Sbjct 7035 AATGTTTCAAACTCAGGATCTTCGGCAGCTCGGATTTCCTGAGAAACAAAATCATAGGCT 7094 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 | ||||| | ||| | ||||| | || || | ||| |||||||||| |||| || Sbjct 7095 CTTAGGTTTAAAGCTAAGCCAATCACCCCAATTGCACTCATCCAAAGACCAGTAACTGGT 7154 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 || || | ||| ||||| || ||||| | || || ||| || | ||| || ||||| Sbjct 7155 ACGAATAGCATGAAGAAGTGTAACCAGCGTTTGTTAGCAAAAGCTACACCGAAAATCTGT 7214 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 |||||||| | ||| ||||| |||||||||||||||||||| |||| || | || ||| Sbjct 7215 GACCAGAATCTGTTAGCAGTTACCATTGAGTAAGTTTCTTCAGCTTGTGTTGGGTTGAAA 7274 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || ||||||||| || ||||||||||| | | || || ||||| || |||| Sbjct 7275 GCACGGAAAGTGTTAGCACCATCACCATCTTCGAATAATGTGTTTTCTACAGTTGCACCG 7334 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064 ||||| ||| | | || ||| |||| | | ||| || ||||||||||| || || ||| Sbjct 7335 TGAATTGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATGGG 7394 Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124 || | |||||||| ||||| || || | ||| |||| || || |||||||||| || Sbjct 7395 TTAAGAGTCCAGTTGTGGAAACCCTGGAAGAATAGAATAAAACGGAAGATTGCTGCAACA 7454 Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 || ||| ||| ||||| ||||||| |||||||| | |||||| || | || ||| Sbjct 7455 CCAAAACTTGGTGCGAAGAACCAACCTGATTGACCTAAAGGGTAAATTAAGAATACAGAT 7514 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGAT 67240 || || |||| || || | ||||| || || || ||||| ||||| | ||| || Sbjct 7515 ACGAATACAGAAATTGGTGCTGAGAAAGCGATTGCGTTGTAAGGACGTAAGTTTACAGA- 7573 Query 67241 GAGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAG 67300 ||| || | |||||| || || | ||||||||| |||| | | || || ||||| | Sbjct 7574 ---ACGCGCAATTTCAAATTGACGTAACATGAAACCGATTAAACCAAACGCACCGTGTAA 7630 Query 67301 CGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTC 67360 || || ||| ||| | || || ||||||| ||| || ||||| || || | || Sbjct 7631 AGCTACGAAAGGCCATAAACCACCTAGTTGGAACCAACGTGTTAAATCACCTTGCGCTTC 7690 Query 67361 AGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGC 67420 ||||||||| | | |||||| || || |||||| | |||||| ||||| ||||| || Sbjct 7691 AGGACCCCATACAAAAAGAAGTGAGTGGCCCATACTGTTAGCAGGAGTTGAAACAGCTGC 7750 Query 67421 TGTGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGT 67480 ||| | || ||| ||| || | ||| || || | || || |||||||| || Sbjct 7751 TGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTTGCTAAACCATGTGTGTACCATGAAGT 7810 Query 67481 GACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCA-GTGGGAAAAAGAA 67539 ||||| || |||||||| | ||| ||||| | ||| | |||||| |||||| || || Sbjct 7811 AACAAATGTTGTACCAGTTAACCAACCACCTAATGCAAAGTAAGCACATGGGAATAATAA 7870 Query 67540 GTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACAT 67599 || || |||||||| || || || || || ||| | | ||||||||| | ||| Sbjct 7871 -TAAACCTGACCAACCTACGAATACGAAACGGTCTTGACGTAACCAGTCATCTGCGTCAT 7929 Query 67600 CGAACCA 67606 ||||||| Sbjct 7930 CGAACCA 7936 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| || ||| Sbjct 6466 CTCCCCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGATTGCTCTACCACTG 6525 Query 35571 AGCTACTGAGGA 35582 ||||||||| || Sbjct 6526 AGCTACTGAAGA 6537 >seq1186 Length=9024 Score = 329 bits (364), Expect = 4e-85 Identities = 357/471 (76%), Gaps = 2/471 (0%) Strand=Plus/Plus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||| ||| | ||| |||||||||||||| |||||||| |||||||| || |||||| Sbjct 5438 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATTACCTCCATA 5497 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || || ||| ||||||| | ||| ||||| || | || ||| | || Sbjct 5498 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCT 5557 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCAT-GGTGCTAACACCAAG 68012 | | ||||||||||||||||| || || | |||||| ||||| | || ||| ||| | Sbjct 5558 ACAACTGACTGGTTGAAGTTGAACCCGTTTAAGTTGAAAGCCATAGTTGATAA-ACCTAA 5616 Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGA 68072 || || ||||| |||| || || ||||| ||||| | ||||||||| | ||||| || Sbjct 5617 AGCTGTAAACCAAATACATACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGA 5676 Query 68073 GTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAAT 68132 ||||||||| || || || |||||||| | |||||| ||||| || |||||||| || || Sbjct 5677 GTTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGAT 5736 Query 68133 GTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGT 68192 ||||||||| ||||||||||||||||||||||||||| ||| || || ||||||| Sbjct 5737 GTTGTAAGTTTCTTCTTCTTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTTTCAGT 5796 Query 68193 GGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCC 68252 |||||||| | | |||||||| || | ||||| ||||| || ||| | || || Sbjct 5797 TGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACC 5856 Query 68253 ACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTT 68303 ||||||||| |||||||| || | ||| ||||| |||||||| | ||| || Sbjct 5857 ACCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAGATATT 5907 Score = 279 bits (308), Expect = 6e-70 Identities = 286/370 (77%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 68460 ACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAA 68519 ||| | ||| | || | |||||| ||||| |||||||| ||||||| | | ||| Sbjct 8457 ACCTAAACGGAAAGATAATTCCCACTCACGGCCCATGTAACAGCAGATACCTAAGAAGAA 8516 Query 68520 GTG---AAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGC 68576 ||| || ||||| |||| |||||||||| ||||| |||||||| ||||| | || Sbjct 8517 GTGGCAAACGATTAA---TTGGTAAGGACCACCGTTGTATAACCACTCGTCAAGAGAAGC 8573 Query 68577 TGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACC 68636 |||||||||||| || || ||||| | ||| || || || || |||| | ||||||||| Sbjct 8574 TGCTTCCCAAATTGGGTAGAAGTGTAAACCGATCGCGTTAGATGTAGGGATAACAGCACC 8633 Query 68637 AGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGAT 68696 || |||||||||||||| || | | |||||||| ||| || ||||| ||||||||||| Sbjct 8634 AGTGATGATGTTGTTACCGTATAATAATGAACCAGAAACTGGCTCACGGATACCATCGAT 8693 Query 68697 GTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCAGCG 68755 ||| ||||| |||||||||||||| |||| |||||| ||||| || |||| | || | Sbjct 8694 GTCAACAGGAGGAGCAGCGATGAATGCGATGATGAATACAGA-AGTAGCTGTTAAAAGAG 8752 Query 68756 TAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCC 68815 |||||||||| | || ||||||||||| | ||| | |||||||| || ||||| | || Sbjct 8753 TAGGGATCATGATAACACCGAACCAACCGATGTATAAACGGTTCTCAGTAGAAGTGATCC 8812 Query 68816 ATTCGCAGAA 68825 | |||||||| Sbjct 8813 ACTCGCAGAA 8822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 68355 AGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGC 68414 |||||| |||||||||| ||||||||||||| ||| |||| | ||| || || | ||| Sbjct 8065 AGGCATACCGTCAGAGAAAGAACCTTGACCGATAGGGTAGATGATGAATACAGCAGTTGC 8124 Query 68415 TGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCAT 68459 || || || || |||||||| |||||| |||||| |||||||| Sbjct 8125 AGCAGCTACTGGAGCAGAGTAAGCAACAGCGATCCATGGACGCAT 8169 >seq681 Length=27805 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 68125 GCAACAATGTTGTAAGTCTCT----TCTTCTTGACCGAACTTGTAACCATAGTTCTGGGA 68180 || || ||||||||||| ||| || ||||||||||||||||||||| ||| || Sbjct 3089 GCTACGATGTTGTAAGTTTCTACGTTCCTCTTGACCGAACTTGTAACCAGCGTTAGCTGA 3148 Query 68181 CTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACT 68240 || | ||||| |||||||| | | |||||||| || | ||||| |||| |||| Sbjct 3149 TTCGTTATCAGTTGTTTCACGGATTAAAGAAGAAGTTACTAATGAACCGTGCAATGCAGA 3208 Query 68241 GAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCA 68296 ||| | || ||||| || || |||||||| || | ||| ||||| | | ||| || Sbjct 3209 GAATAATGAACCACCGAAAACACCAGCAACACCTAACATGTGGAACGTGAGCAGCA 3264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572036287327560