Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq115 127 6e-24 >seq115 Length=153645 Score = 127 bits (140), Expect = 6e-24 Identities = 195/276 (71%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| || || || || | ||||| || || || || ||||| ||||| ||||| Sbjct 94649 CGGCGCTGGATGTAGCCTGTGGATGATGTCTTGACGGCCGTGTCAATCAGACCTTCACGA 94590 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||| | ||| ||||||| | | | ||| |||| Sbjct 94589 CCACCCATCGCGTGGAAGAAAAACTCCTGGGGTGTGAGCCCCCTCAGATATGAGTTCTCC 94530 Query 302713 ACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 || || || |||| |||||| | ||| |||||| ||||| ||||| || | | | Sbjct 94529 ACAAAGCCTCGCGACTCGGGGCCAAAGTCATCCTTGGTGAAGTGGGGCAGCGTGCGCTGC 94470 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATC 302832 | |||| | ||||| ||| | || || ||||||||||| |||| || |||||| Sbjct 94469 TGGAAGCCAAAGGGGATGCGCCTCCCCTCCACGTTCTGCTGCCCCACACAGCCCATCATC 94410 Query 302833 TGCGAAATATT--TAAATCACTGCCCTTGGAGCCAG 302866 || || || || | || | |||||| ||||||| Sbjct 94409 TGTGAGATGTTGATGAAGGA--GCCCTTCGAGCCAG 94376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471769833539621