Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq1134 497 1e-135 seq1186 370 1e-97 seq681 111 2e-19 >seq1134 Length=9887 Score = 497 bits (550), Expect = 1e-135 Identities = 720/1011 (71%), Gaps = 8/1011 (1%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | ||| || || || || || || ||||| || || || || || Sbjct 7921 GATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTA-TTATT 7863 Query 159366 CCCAC-TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTG 159424 |||| |||||| | || | || |||||| | ||||| ||| | |||||||| || Sbjct 7862 CCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATG 7803 Query 159425 GTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGT 159484 |||||| || ||| | || | ||| || | || ||| |||||| | ||||||||||| Sbjct 7802 GTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 7743 Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544 || || |||||| || |||||| || || |||||| | | ||||||||||| | || Sbjct 7742 TTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCA 7683 Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 || |||| || |||| |||||| || || |||||| ||| || || | ||||| Sbjct 7682 AGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGG 7623 Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTAT 159664 ||| || | |||| ||||||||| | ||||| |||||| | || ||| || || | Sbjct 7622 TGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGCGCGT-TC--TGTAAA 7566 Query 159665 C---CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 159721 | ||||||||||| || || || ||||| | || ||| |||| || || || || Sbjct 7565 CTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATTCGTATCTGTATT 7506 Query 159722 CCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 159781 | | || ||||| || ||||| || ||||||| ||||| || ||||| || ||||| Sbjct 7505 CTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAGC 7446 Query 159782 AATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCA 159841 |||||| | || | | ||| | || || || ||||||||||| | || || ||||| Sbjct 7445 AATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCCA 7386 Query 159842 TATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTAC 159901 |||||||| ||||||||| | |||||| || || | |||| || || || | || Sbjct 7385 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAAC 7326 Query 159902 TGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 159961 |||||| |||||| | | |||||||| || || || || || || || | | Sbjct 7325 TGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCGTGCTTTCAACCC 7266 Query 159962 AACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 160021 ||| |||| || || |||||||| ||||| ||||| ||| | |||||||| ||||| || Sbjct 7265 AACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTGGTCACAGATTTT 7206 Query 160022 CGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTAT 160081 |||| | || ||| ||||||| || ||| | || ||||||||| | || || || |||| Sbjct 7205 CGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATTCGTACCAGTTAC 7146 Query 160082 GGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGA 160141 |||||||||| | ||||| | |||||| | ||| | || || | || || || Sbjct 7145 TGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCTAAGAGCCTATGA 7086 Query 160142 TTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 160201 ||| || ||| || ||| |||| || |||||||| || ||||| || ||||| || || Sbjct 7085 TTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAACATTCTATACAAA 7026 Query 160202 AAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGA 160261 ||| ||| |||| || ||||| | ||||| ||| |||| || || ||||| || || Sbjct 7025 AAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGACCAACCACACGA 6966 Query 160262 AAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATA 160312 | || | ||||| ||||||||||| ||| | || ||||| |||||||| Sbjct 6965 ACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTTTAATA 6915 >seq1186 Length=9024 Score = 370 bits (410), Expect = 1e-97 Identities = 364/470 (77%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 158102 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158161 || ||| | |||||||| ||||| ||| | ||||||||||| ||||| ||||| || | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 158162 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 158221 ||||| ||||||||||| | || ||||| || | | |||||||| ||||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 158222 GAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCA 158281 || ||| ||| |||||||||||||||||||| ||||| || || |||||||| || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 158282 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCC 158341 ||||| || ||||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 158342 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTC 158401 || ||||||||| | ||||| ||||| ||||| | || ||||| || || | || | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 158402 TCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 158461 || || ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 158462 GGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTT 158521 |||||||| || ||||| ||||| || | | ||||| ||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 158522 ATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571 |||||||| |||||||| ||||||||||| || ||| | ||| ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 288 bits (318), Expect = 1e-72 Identities = 286/368 (78%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||||||||||||| | |||||||| | ||||| | || ||||||||||||| || | Sbjct 8823 TTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTAT 8764 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 ||||| || ||||| || |||| || ||||| |||||| |||| ||| ||||||||| Sbjct 8763 CATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTC 8705 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | ||||| |||||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 8704 CTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACA 8645 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 |||||||| ||||||| ||| | || | || ||||| || ||| | |||||||| || | Sbjct 8644 ACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAA 8585 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| || || ||||| |||||| | || ||||||||||||| |||| | | | Sbjct 8584 TTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 8525 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 | | |||||| || | ||||||| |||||||| |||||||||||| | || | || Sbjct 8524 TTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 157938 GTTTAGGT 157945 |||||||| Sbjct 8464 GTTTAGGT 8457 Score = 116 bits (128), Expect = 4e-21 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 157946 ATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 158005 ||||| || |||||| ||| || || ||||||||||| ||||| ||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 158006 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057 || |||| ||| ||||||||||||||||||| || | ||||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 158112 TGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTA 158171 ||| | ||||||| ||| | ||||||||||| || |||||||| || | |||||||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 158172 TGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGA 158231 ||||||| | || ||||| || | | |||||||| ||||| | || ||| | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 158232 ACTACGGTTACAAGTTCGGTCAAGAGGA----AGAGACCTATAACATCGTCGCA 158281 || ||||||||||||||||||||||| ||| || || |||||||| ||| Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548357037095560