Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq1134 531 6e-146 seq1186 358 7e-94 seq681 123 3e-23 >seq1134 Length=9887 Score = 531 bits (588), Expect = 6e-146 Identities = 738/1028 (72%), Gaps = 12/1028 (1%) Strand=Plus/Minus Query 152356 TGGTTTGATGTCCTGGATGACTGGCTTAAGAGA-GACCGTTTCGTTTTTGTTGGTTGGTC 152414 ||||| |||| | ||||||||| ||| | | ||||||||||| || || |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGG-TTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 7878 Query 152415 TGGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTA 152473 || || || || |||||| |||||| |||| | || |||||| | ||||| || | Sbjct 7877 AGGT-TTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAA 7819 Query 152474 CTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACT 152533 | || | || ||||| || || || || |||| ||| || | || || |||| Sbjct 7818 CATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACT 7759 Query 152534 TTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCT 152593 | | || || || ||||| ||||| || | |||||| || || ||||| || | | Sbjct 7758 TCTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTAT 7699 Query 152594 GGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTT 152653 |||||||||| || ||||| ||||| | ||| | || || || || | ||| ||| Sbjct 7698 GGGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTT 7639 Query 152654 TTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGG 152713 | || || | ||||| || || | | |||||||||||||| | || || |||||| | | Sbjct 7638 TCGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTG 7579 Query 152714 CACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCT 152769 | ||| || ||| | ||||| ||||| || || || ||||| | || || || Sbjct 7578 CGCGT----TCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCT 7523 Query 152770 GTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCA 152829 || || || || || | || |||||| | |||||||| ||||||| ||||| ||| Sbjct 7522 GTATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCA 7463 Query 152830 TCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGG 152889 ||| || || |||||||||||||| || |||| ||| | || || |||||||||||| Sbjct 7462 AGTTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGG 7403 Query 152890 ACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCT 152949 || | || || || || |||||||||||||| ||| |||| || | || || | | | Sbjct 7402 ACTCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGT 7343 Query 152950 GCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACT 153009 || ||||| |||| || ||||| || || || | |||||||||| || |||||| Sbjct 7342 GCAATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACT 7283 Query 153010 TTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGT 153069 ||| |||||| || || |||| ||||| || || || ||||| ||||||||| | Sbjct 7282 TTCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGA 7223 Query 153070 TTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATG 153129 |||||||| ||||| || || | |||||| || ||||||||| | || ||||| ||| Sbjct 7222 TTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATG 7163 Query 153130 CTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTC 153189 || || ||||| |||| |||||||||| | | ||||| | ||||| | ||| | Sbjct 7162 CTATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTA 7103 Query 153190 AATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTT 153249 || || | || || |||||||| ||||| |||||| | || | ||||||||||| ||| Sbjct 7102 AACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTT 7043 Query 153250 GAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCT 153309 || || |||||||| || |||||| | || || |||||| ||||||| ||| |||| || Sbjct 7042 GAAACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCT 6983 Query 153310 GTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCT 153369 |||||||| || || || || ||||||||||| ||||| || || || |||||| Sbjct 6982 CAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCT 6923 Query 153370 CTGTGATA 153377 || | ||| Sbjct 6922 CTTTAATA 6915 >seq1186 Length=9024 Score = 358 bits (396), Expect = 7e-94 Identities = 356/461 (77%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 151370 ATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCA 151429 |||||||| ||||| ||| | ||||| |||||||| || ||||| || | ||||| || Sbjct 5898 ATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 5839 Query 151430 ATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAG 151489 ||||||||||| | || |||||||| | | ||||| || || |||||||| || Sbjct 5838 ATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCT 5779 Query 151490 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGT 151549 ||| ||||||||||||||||||||||||||| || ||||||||||| || ||||||||| Sbjct 5778 AACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 5719 Query 151550 TACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTC 151609 |||||||||||| | ||||||||||||||||| |||||||| || ||||| | |||||| Sbjct 5718 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTC 5659 Query 151610 TTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATG 151669 ||| | || || ||||| ||||| |||| ||||| || || | ||| | || ||| Sbjct 5658 TTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTATG 5599 Query 151670 GCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTC 151729 || |||||| | ||||| ||||||||||||||||| | | || ||| || || Sbjct 5598 GCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTGTA 5539 Query 151730 CTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAG 151789 | ||||| ||||| ||| | | |||||||| | |||||||| || ||||| || Sbjct 5538 TTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATGAA 5479 Query 151790 CGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 ||||| ||||||||||||||||| ||| | ||| ||| ||| Sbjct 5478 CGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 309 bits (342), Expect = 3e-79 Identities = 288/366 (79%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 || || || ||| | || |||||| | |||||| | || |||||||||||||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCCC 150958 ||||| || ||||| || |||| || | |||||| | ||||||||||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCT 8703 Query 150959 CCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAAC 151018 ||||| ||||||||||| |||||||| || ||| ||||||| | | |||||||||||| Sbjct 8702 CCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAAC 8643 Query 151019 ATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATC 151078 |||||| ||||||||||| | ||| | |||||||| |||||| | |||||||| || || Sbjct 8642 ATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATT 8583 Query 151079 TGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTC 151138 ||||||||||| ||||| || || ||| | |||||||||||||||| |||| | | || Sbjct 8582 TGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 8523 Query 151139 TTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCGC 151198 | ||||||| | | ||||||| ||||||||| |||||||||||| | |||| ||| Sbjct 8522 TGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCGT 8463 Query 151199 TTGGGT 151204 || ||| Sbjct 8462 TTAGGT 8457 Score = 113 bits (124), Expect = 5e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 151205 ATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTC 151264 |||||||| |||||| ||||| |||||||||||||| |||||||| | ||| || ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 151265 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316 || |||| ||| |||||||||||||||||||||| | ||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 123 bits (136), Expect = 3e-23 Identities = 133/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 151368 TGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGG 151427 || ||| | | ||||| ||| | ||||| |||||||| |||||||| || | ||||| | Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 151428 CAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCC 151487 || |||||||||| | || |||||||| | | ||||| || || || ||||| || Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 151488 AGAACTATGGTTACAAGTTCGGTCAAGAAGA----AGAGACCTACAACATCGTTGC 151539 ||| ||||||||||||||||||||| || ||| || ||||||||||| || Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549604997580760