Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1134 489 2e-133 seq1186 297 2e-75 seq681 89.7 6e-13 >seq1134 Length=9887 Score = 489 bits (542), Expect = 2e-133 Identities = 728/1031 (71%), Gaps = 31/1031 (3%) Strand=Plus/Minus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| |||||| ||| |||||||||||| | || ||||| ||| | ||| | || Sbjct 7921 GATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTATTATTC 7862 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 || ||||||||| | ||| | || |||||||| || || || || || || |||||| Sbjct 7861 CCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATGG 7802 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 |||||||||||| | ||| | || || | || || || || ||||| ||||| || Sbjct 7801 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTT 7742 Query 73556 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAA 73615 ||||| |||| | | |||||| || || | || | ||||| || || || ||| Sbjct 7741 TCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCAA 7682 Query 73616 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 73675 || ||| | ||| ||||| ||| ||||||| ||||| || ||||| ||||| || Sbjct 7681 GGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGGT 7622 Query 73676 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 73735 | ||||| | || ||||||||| | | || ||||| ||||| | ||| || Sbjct 7621 GCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGCGCGTTCTGTAAACTTA 7562 Query 73736 CGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCT---TT 73792 ||||||||||||||| | ||||| |||||| || | |||||| | |||| || Sbjct 7561 CGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATTC----GTATCTGTATT 7506 Query 73793 C-TAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGC 73851 | |||| || |||||||| || |||||||||||||||| || ||||| ||||| Sbjct 7505 CTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAGC 7446 Query 73852 AATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCA 73911 |||||| |||| |||| ||||| | |||||||||||||| |||||||| ||||| || Sbjct 7445 AATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCCA 7386 Query 73912 TATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAAC 73971 ||||||||||| || ||| | | |||| || ||| ||||||| || || |||||||| Sbjct 7385 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAAC 7326 Query 73972 AGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTAC 74031 ||| | |||||||| | |||| | ||| ||| ||| Sbjct 7325 TGTAGAAAACACATTATTCGAAG------------ATGGTGATGGT---------GCTAA 7287 Query 74032 AACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAA 74091 |||||| | || ||| | || ||||| | ||||| ||||| ||| | |||||||| Sbjct 7286 CACTTTCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAA 7227 Query 74092 CAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCT 74151 |||||||||||||||||| || ||| |||| ||| | |||||| | | ||||||||| | Sbjct 7226 CAGATTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTT 7167 Query 74152 TATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGC 74211 ||| | |||||||| || | ||| | |||| | || || | | || |||| Sbjct 7166 CATGCTATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGC 7107 Query 74212 ACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGA 74271 | ||||| ||||| || || ||||| ||||| || || |||| || ||||| || || Sbjct 7106 TTTAAACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGA 7047 Query 74272 GTTTGAAACCTTCTACACTAAGAACATTCTTCTT-AATGAAGGTATGAGAGCATGGATGT 74330 ||||||||| ||||| || || || | |||| || ||||||||||| | || |||||| Sbjct 7046 GTTTGAAACATTCTATACAAAAAATA-TCTTATTAAATGAAGGTATTCGTGCGTGGATGG 6988 Query 74331 CATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCA 74390 | || || ||||| || || || || ||||| |||||||| || || || || | Sbjct 6987 CTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTA 6928 Query 74391 ACGCACTATAA 74401 |||| || ||| Sbjct 6927 ACGCTCTTTAA 6917 >seq1186 Length=9024 Score = 297 bits (328), Expect = 2e-75 Identities = 346/465 (74%), Gaps = 4/465 (1%) Strand=Plus/Minus Query 72764 TAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTG 72823 |||||||||| ||||| ||| |||||| || ||| | || |||||| | ||| | Sbjct 5900 TAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAG 5841 Query 72824 CAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTC 72883 | |||||||||||| | || ||||| ||| ||||| | || ||||| || ||||| || Sbjct 5840 CTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAA--TC 5783 Query 72884 AA--AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCA 72941 | ||| || || |||||||| |||||||||||||| || ||||| || ||||| || Sbjct 5782 AGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 5723 Query 72942 TGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACA 73001 || ||||| ||| | ||||||||||| || || |||||||||||||||||||||||||| Sbjct 5722 CGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACA 5663 Query 73002 CTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTAC 73061 ||||||| | |||| | || || || ||| | ||||| || | | ||| | | || Sbjct 5662 CTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAAC 5603 Query 73062 AATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAA 73121 ||||| |||||| | ||||| |||||||||||||| ||||||||||| | | || Sbjct 5602 TATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCG 5543 Query 73122 GATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCA 73181 | || || |||| || | | ||| | || ||| | || ||||| || ||||| Sbjct 5542 TGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCA 5483 Query 73182 TGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 73226 |||| | || || ||||||||||| |||||| |||| |||| ||| Sbjct 5482 TGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 262 bits (290), Expect = 5e-65 Identities = 272/354 (77%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || || |||||| | || || ||||| || || | ||| | |||||||| ||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| |||| |||| ||| || || ||||| | |||||||||||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCT 8703 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 || || || ||||| || ||| | || |||||| | ||||| || ||||| ||||||||| Sbjct 8702 CCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAAC 8643 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 |||||| |||||||||| | || | || ||||| || || ||||||||||| || || Sbjct 8642 ATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATT 8583 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 ||||||||||| || | ||||||||||| || ||||| ||||||||||| ||| | || Sbjct 8582 TGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 8523 Query 72535 TTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATC 72587 | ||||||| | | || |||| ||| |||||||| | |||||||| |||| Sbjct 8522 TGCCACTTCTTCTTAGGTATCTGCTG-TTACATGGGCCGTGAGTGGGAATTATC 8470 >seq681 Length=27805 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/175 (72%), Gaps = 8/175 (5%) Strand=Plus/Minus Query 72767 TGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAA 72826 ||| | | ||||| ||| |||||| || ||| | ||||||||| | ||| |||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 72827 TGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCA-- 72884 ||||||||||| | || ||||| ||| ||||| | || ||||| || ||| || ||| Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAAC--GAATCAGC 3144 Query 72885 AAACTACGGCTATAAGTTCGGACAAGAAGA----AGAAACATATAACATTGTTGC 72935 ||| || || |||||||| ||||| || |||||| || ||||| || || Sbjct 3143 TAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572855461389640