Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2326 87.8 1e-12 seq2016 87.8 1e-12 seq533 87.8 1e-12 seq493 87.8 1e-12 >seq2326 Length=1360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 661 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 720 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 721 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 758 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 1030 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 1089 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 1090 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1127 >seq2016 Length=2168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 1455 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 1514 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 1515 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1552 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 1836 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 1895 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 1896 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1933 >seq533 Length=40786 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 40113 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 40172 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 40173 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 40210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 40490 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 40549 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 40550 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 40587 >seq493 Length=45929 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 45684 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 45625 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 45624 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 45587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325682745557927