Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1134 450 1e-121 seq1186 349 4e-91 seq681 120 3e-22 >seq1134 Length=9887 Score = 450 bits (498), Expect = 1e-121 Identities = 695/987 (70%), Gaps = 14/987 (1%) Strand=Plus/Minus Query 158805 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCAC-TGCTTATCTTGC 158863 || |||||||| || || || ||||| || || || || | |||| |||||| |||| Sbjct 7903 GACCGTTTCGTATTCGTAGGTTGGTCAGGT-TTATTATTATTCCCATGTGCTTACTTTGC 7845 Query 158864 TATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGC 158923 | || |||||| | ||||| || || || | ||| ||||| |||||||| | || Sbjct 7844 ATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATGGTACACACATGGTTTAGC 7785 Query 158924 TACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGC 158983 ||||| || | || ||| ||||| | |||||||| ||||| ||||| ||| | Sbjct 7784 AACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTTTCAACTCCTGCTAACAG 7725 Query 158984 TATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 159043 |||||| || || ||||| || | ||||||||||| || ||||| ||||| | || Sbjct 7724 TATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCAAGGTGATTTAACACGTTG 7665 Query 159044 GGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGG 159103 | ||||||| || || | ||| ||| || || | |||||||| |||| |||| || Sbjct 7664 GTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGGTGCGTTTGGTTTAATCGG 7605 Query 159104 TTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCCTACAATG 159159 ||||||| | || || |||||| | || ||| || ||| | ||||| ||||| | Sbjct 7604 TTTCATGTTACGTCAATTTGAAATTGCGCGT----TCTGTAAACTTACGTCCTTACAACG 7549 Query 159160 CTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTG 159219 | || || ||||| | || ||| |||| || || || ||| | || ||||| | | Sbjct 7548 CAATCGCTTTCTCAGCACCAATTTCTGTATTCGTATCTGTATTCTTAATTTACCCTTTAG 7489 Query 159220 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTAC 159279 |||| || ||||||| ||||| || ||||| || || ||||| ||| | || | | Sbjct 7488 GTCAATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAGCAATCTTCCGTTTTATTC 7429 Query 159280 TCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTG 159339 | ||| | || || |||||||| ||||| || ||||| ||||| |||||||| ||||||| Sbjct 7428 TATTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCCACATGATGGGTGTTGCTG 7369 Query 159340 GTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTAT 159399 || | |||||| || | ||| ||| ||||| || | || || ||||| ||||||| Sbjct 7368 GTGTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAACTGTAGAAAACACATTAT 7309 Query 159400 ACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGA 159459 ||| ||||| || || ||||| || || || | |||| |||| || || | Sbjct 7308 TCGAAGATGGTGATGGTGCTAACACTTTCCGTGCTTTCAACCCAACACAAGCTGAAGAAA 7249 Query 159460 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTA 159519 |||| || ||||| ||||| ||| | |||||||| ||||| ||||| | || ||| ||| Sbjct 7248 CTTACTCAATGGTAACTGCTAACAGATTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTA 7189 Query 159520 ACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGA--CATC 159577 |||| || ||| | || ||||| ||| | || || || |||| ||||| |||| | Sbjct 7188 ACAAACGCTGGTTACACTTCTTCATGCTATTCGTACCAGTTACTGGTCTTTGGATGAGTG 7129 Query 159578 CAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGA 159637 || ||||| | ||||| | ||| | || || | || || ||||| || ||| || Sbjct 7128 CA--ATTGGGGTGATTGGCTTAGCTTTAAACCTAAGAGCCTATGATTTTGTTTCTCAGGA 7071 Query 159638 GATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAA 159697 ||| |||| || |||||||| || |||||||| ||||| || || || || | | || Sbjct 7070 AATCCGAGCTGCCGAAGATCCTGAGTTTGAAACATTCTATACAAAAAATATCTTATTAAA 7011 Query 159698 TGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCC 159757 |||||| | ||||| ||| |||| || || ||||| || ||| || | ||||| Sbjct 7010 TGAAGGTATTCGTGCGTGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCC 6951 Query 159758 AGAAGAAGTTCTACCAAGAGGTAACGC 159784 |||||||| |||| | |||||||| Sbjct 6950 TGAAGAAGTATTACCTCGTGGTAACGC 6924 >seq1186 Length=9024 Score = 349 bits (386), Expect = 4e-91 Identities = 357/466 (77%), Gaps = 0/466 (0%) Strand=Plus/Minus Query 157573 AATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTG 157632 ||||| | ||||| || ||||||||| | || |||||||| ||||| ||||| || || Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 157633 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACA 157692 ||||| ||||||||||| | || ||||| || | | |||||||||||||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 157693 GAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCT 157752 || ||| ||| ||||||||||||||||||||||||||| || ||||||||||| ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 157753 GCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGT 157812 |||||||||||||| ||||| | ||||||||||||||||||||||||||| | Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 157813 CTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTA 157872 | ||||||||| | || || ||||| ||||| | || ||||| || || | || || Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 157873 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 157932 || ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 157933 GGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTT 157992 |||||||| || ||||| ||||| || || | ||||| ||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 157993 ATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTG 158038 |||||||| |||||||| ||||||||||| || || | ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTG 5442 Score = 268 bits (296), Expect = 1e-66 Identities = 281/367 (77%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||||||||| | ||||| || | |||||||| || | |||||||||||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || | | |||| ||| |||| ||||| | |||||| | || || || Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| ||||| ||||| ||||| || || |||||| ||||||| | | || || ||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 ||||||| ||||||| ||| | ||| | || ||||| |||||| | ||||||||||| || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 ||||||||||| || ||||| |||||| | |||||||||||||||| |||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | |||||| | | || |||| || ||||| |||||||||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 157410 TTTAGGT 157416 ||||||| Sbjct 8463 TTTAGGT 8457 Score = 113 bits (124), Expect = 5e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 157417 ATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTC 157476 ||||| || |||||| |||||| ||||| || ||||| |||||||| | ||| |||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 157477 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 157528 || |||| ||| ||||||||||||||||||| || | ||||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 120 bits (132), Expect = 3e-22 Identities = 127/167 (76%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 157589 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 157648 ||||||||||| | || |||||||| || |||||||| || || |||||||| |||||| Sbjct 3255 CGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACG 3196 Query 157649 GAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTATG 157708 | | || ||||| || | | |||||||||||||| | || ||| ||| || Sbjct 3195 GTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTG 3136 Query 157709 GTTACAAGTTCGGTCAAGAAGA----AGAGACGTACAACATCGTTGC 157751 ||||||||||||||||||| || ||| || ||||||||||| || Sbjct 3135 GTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545256335274640