Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 178 1e-39 seq28 136 4e-27 seq99 87.8 2e-12 seq2016 86.0 6e-12 seq2326 84.2 2e-11 seq533 84.2 2e-11 seq67 84.2 2e-11 >seq7 Length=421595 Score = 178 bits (196), Expect = 1e-39 Identities = 532/811 (66%), Gaps = 25/811 (3%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 |||||||| ||||||||||| |||||||||||| | ||| ||||| ||| | ||| Sbjct 314607 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGGGAC 314548 Query 148011 GACATGAGCGTGT---ACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | ||||| || | | |||| ||||| |||| || ||||||||||||||||| Sbjct 314547 G---TGAGCTTGCCGAAGTTGGGGTCCGGCATGAACACGTTGAACGACTGGCTCTGGTCG 314491 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTTTATCTTCATCTCCCAG 148124 ||||| || ||||| || |||||||| || | || |||| ||| |||||||| Sbjct 314490 ATGAAGGCCCCACGATCCGCGGCCATGTCCACCAGCACACGCT---GCTTGATCTCCCAC 314434 Query 148125 GCCGTCTTGTACAG---CCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAG 148181 ||||||||||||| ||| | | ||| || || ||| | ||| || || Sbjct 314433 ACCGTCTTGTACAGGGAGCGC---AGCTCATCAGGGAT---GTCCAGAGCCTGGACTGAC 314380 Query 148182 CCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGG 148241 ||| | ||| | | || || || || | | ||| | | |||| Sbjct 314379 CCGTTGGCCGCCACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTACAGG 314320 Query 148242 TCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATAC 148301 || | | ||| | ||| ||||| ||| |||||||| | |||||||| |||| || Sbjct 314319 TCGTGCAGCAGGTGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAG 314260 Query 148302 ACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCC 148361 | |||| || | || ||||| |||||||||| |||| |||||| | ||| | ||| Sbjct 314259 ATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCG 314200 Query 148362 GTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT-TTTGCGCTT 148420 ||||||||| ||| | ||||||||||||||||| ||| || | ||||| Sbjct 314199 GTGGGCATGGGCGCCAGCAGCAGCGAGTTGCGCACGCCGTTGGCGGCAATGTCTGCGC-G 314141 Query 148421 CAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 ||| | |||||||||||| | ||| ||| | ||||||||| | |||||| | Sbjct 314140 CAGGCCAGCCCAGTCCCAGCGGTCCGAGCCCTTCATGCCCCACATGTCATGCTGCAGCAC 314081 Query 148481 GCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTC 148540 ||| | | ||| ||| ||| | || || || | | | ||||| || Sbjct 314080 GCCCTGAGACACAGGGGAGCCAGGGTATGTCTCATAGGGGCCCTCCTTCTTGGCCAGCTC 314021 Query 148541 GCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGC 148600 | || || || || ||||||| || ||| || | | |||| ||| || Sbjct 314020 CATGGACGTCTTCAGGGCCGCGTAGTAGATGCACTCAAAGATGTCCTTGTTCAGCTGCTG 313961 Query 148601 CGCC-GACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTA 148659 |||| | || || | ||||| | |||| ||| |||||||| || |||||||| | Sbjct 313960 CGCCTCAGGCG-AGTCAAAGGGCATGCCCAGCAGCAGGAACGCGTCAGCCAGGCCCTGGA 313902 Query 148660 CGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGT 148719 | || | |||||||| ||||| | ||||||| | ||| ||| | || || | Sbjct 313901 CCCCGATACCAATGGGGCGGTGGCGCAGGTTGGAGCGCTCGGCGGTCTTCACAGGGTAAT 313842 Query 148720 GGTTGCGGTCGATGATCTTGTCAAGATTGCG 148750 |||| |||||||||||||| || ||||| Sbjct 313841 AGTTGACGTCGATGATCTTGTTCAGGTTGCG 313811 Score = 123 bits (136), Expect = 2e-23 Identities = 172/238 (72%), Gaps = 16/238 (7%) Strand=Plus/Minus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 ||||| || || || |||||||| || ||||| ||| | ||||||| |||||||| Sbjct 313454 GCGATGGACGCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCGTGTACTCCACGATCTCA 313395 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | |||||| ||| ||| ||||| |||| ||||| || || ||||| ||||||| Sbjct 313394 GTGCACAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGACTTGCGGTTGCAC 313335 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAAC 148997 | ||||||||||||||||||||| ||| || || | ||||| || | || |||| Sbjct 313334 GAGTCCTTGTACAGCATGTACGGGTTGCCCGTCTCGATCTGCGCCTCGAGGATGGCGAAC 313275 Query 148998 CGATGCAGGTCCTGCGCGCGCA----CTTGC-TGCTCGTAGCGACCCTCCTGCTCGTA 149050 | ||| | ||||||||||| ||||| ||| ||||||||||| ||||| Sbjct 313274 C---ACAGCTGCTGCGCGCGCACGACCTTGCGTGC-----GCGACCCTCCTTTTCGTA 313225 Score = 113 bits (124), Expect = 4e-20 Identities = 164/227 (72%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 120636 GTACAG---GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCT 120692 |||||| |||||||||||| ||||||||||| ||||| || || || || |||| Sbjct 151337 GTACAGCGTGCACGCAAAGTCGGTGTGCAGGCCTTCGTCACGAGAGATGAGGACGTTTGA 151396 Query 120693 AAACGTCAGGCCGGGCATGA--TGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTG 120750 || | ||||||||||||| ||| | | |||| |||| ||||| ||| | Sbjct 151397 GAAGGAGAGGCCGGGCATGAGCAGCC--GCTTTTTGAGCCAGAAGATGGCACAGAAGGAG 151454 Query 120751 CCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCC 120810 || |||||| | |||||||||| |||||| ||||||| |||||| || ||||| | Sbjct 151455 CCAGAAAAGTGGATGCCCTCCACGCAGGCAAACGCGACCAAGCGCTCAGCAAACGT-ACG 151513 Query 120811 GTCTTGCTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCAC 120857 ||| | ||||||||| || ||||| | |||||| |||| ||| Sbjct 151514 GTC--CGAGGAGATCCACTTGATTGCCCAGTTGGCCTTCTTGCCCAC 151558 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 120463 ACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCC 120522 || ||||| || ||||| || |||| ||||||| || ||| |||||||||||||||| Sbjct 150943 ACCAGCAGCCGATCCGCCACGAACTGGATGTACTGGCCCATCAGCTGCGCGTTCATGCCC 151002 Query 120523 AGCAACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCT 120580 | || | |||| |||| |||| ||| | |||||| ||| | ||||| ||||||| Sbjct 151003 ACCAGCCCCACGGGCAGCGCCTCAGTGCAGAACTCCAGCTCCAGATCCACAGCCTCCT 151060 Score = 86.0 bits (94), Expect = 6e-12 Identities = 183/272 (67%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 149406 TTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGC 149465 ||||| | | || ||||||||||||| | |||| ||||| | || || || |||| Sbjct 312412 TTGTGGATGGAGAGGCCGATGCCGCCGGCCGACTTGGAGATCACAGCACACTCCTTGAGC 312353 Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGT---CAGCAGAAAGCACGAGCAC 149522 || |||||||| |||||| ||| ||| ||| || ||| ||||| ||| || Sbjct 312352 GTGTCATAGATGCCGTCGATGGAATCG---TTCTTGGCACACACCAGGAAGCAGGAGGAC 312296 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 | || || | ||||||| ||| | ||||||| |||||| || || | | Sbjct 312295 AGCTGGGGGCGGGGGGTGCCGGAGTTGAAGAGGGTGGGGGAGGCGTGCGTGAACCAGCGC 312236 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 | ||| | | ||||| | || || || |||||||| |||||||| | | Sbjct 312235 TCAGACATGAGGTGGTACGTGTTGATGGCGGCATCGATGTCATCCTTGTGGATGCCCACG 312176 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTC 149674 || |||||||||||||| ||||| || ||||| Sbjct 312175 GCCACGCGCATCAGCATGTGCTGGGGGCGCTC 312144 >seq28 Length=264079 Score = 136 bits (150), Expect = 4e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| ||||||||||||||||| || || || ||||||||| ||| || Sbjct 66422 CAGGCATGCAAAGTCGGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGT 66481 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 |||||||||||||| ||| | |||||| |||| |||| | ||| ||| ||||| Sbjct 66482 CAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAAAA 66541 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAA 120803 ||| | ||||||||| |||||||| || | |||||| || || Sbjct 66542 GAAGATGCCCTCCACAGCAGCAAAGGCCACTAGGCGCTCAGCAAA 66586 >seq99 Length=163232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 ||||||||||||||| |||||||||||||| || || || || ||||| ||| || || Sbjct 95327 CAGGCACGCAAAGTCGGTGTGCAGGCCCTCATCACGTGAGATGAGCTCATTGGAGAAGGT 95268 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCG 120741 ||||||||||||| |||| | |||| | || | |||||| Sbjct 95267 GAGGCCGGGCATGAGGCCTCGCTTCTTCAGCCAGTAAATGGCG 95225 >seq2016 Length=2168 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 || |||||||| |||||| ||||||| | ||||| ||||| | || ||| || || Sbjct 1716 CCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCTGAGGACTCAACCTCA 1775 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | ||||| ||| ||||||||||| || || ||||| ||||||||| Sbjct 1776 AGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATG 1820 >seq2326 Length=1360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| ||| ||| |||||| ||||||||||| Sbjct 676 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 735 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||| | || || ||||||||||| || ||||||||| Sbjct 736 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 771 >seq533 Length=40786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| ||| ||| |||||| ||||||||||| Sbjct 40505 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 40564 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||| | || || ||||||||||| || ||||||||| Sbjct 40565 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 40600 >seq67 Length=188910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| ||| ||| |||||| ||||||||||| Sbjct 176543 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCA 176602 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 || | ||||| ||||||||||| || ||||||||| Sbjct 176603 GCAAAGATGAGTCGCTGCTGGTCAGGCGGGATGCCT 176638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405493688920