Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq1186 345 1e-90 seq681 111 5e-20 >seq1186 Length=9024 Score = 345 bits (382), Expect = 1e-90 Identities = 347/449 (77%), Gaps = 4/449 (1%) Strand=Plus/Minus Query 20036 ATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCG 20095 |||||||| ||||||||| | ||||| ||||||||||| ||||| ||| ||||| || Sbjct 5898 ATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 5839 Query 20096 ATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAG 20155 ||||||||||| | || || || || | | ||||| || |||||| | ||| |||| Sbjct 5838 ATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAA--TCAG 5781 Query 20156 --AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATG 20213 ||| |||||||||||| || ||||||||||| || || ||||||||||| || || | Sbjct 5780 CTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACG 5721 Query 20214 GTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACT 20273 |||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct 5720 GTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACT 5661 Query 20274 TCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAA 20333 ||||| | ||||| ||||| || ||| | |||||||| | || || || | || || | Sbjct 5660 TCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTA 5601 Query 20334 TGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTG 20393 |||| || || | ||||| |||||||| |||||||| || | ||| | ||||||| Sbjct 5600 TGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTG 5541 Query 20394 TCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATG 20453 | | | |||||||||||||| |||| |||||||| | || | ||||| ||||||| Sbjct 5540 TATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATG 5481 Query 20454 AACGGAATGCTCATAACTTCCCACTTGAC 20482 |||| || ||||| |||||||| || ||| Sbjct 5480 AACGTAACGCTCACAACTTCCCTCTAGAC 5452 Score = 168 bits (186), Expect = 2e-37 Identities = 254/352 (72%), Gaps = 7/352 (2%) Strand=Plus/Minus Query 19514 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 19573 ||| ||||||| || | |||||| | || | || ||||| || | ||||| || Sbjct 8813 TGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCT 8754 Query 19574 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGA 19632 ||| | |||| || |||| ||||| || |||||||| || ||||| || ||||| Sbjct 8753 ACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCCTCCTGTTGA 8695 Query 19633 CATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTT-TATGGAAACAACATCATAT 19691 ||| ||||| ||||| || || || || ||| | || || || || ||||||||||| Sbjct 8694 CATCGATGGTATCCGTGAGCCAGTTTCTGGTT-CATTATTATACGGTAACAACATCATCA 8636 Query 19692 CGGGAGCCGTCGTTCCGAGCAGC-AATGCCATCGGACTACACTTCTACCCAATTTGGGAA 19750 | || || || | || | || | || || ||||| ||||||||||||||||||||||| Sbjct 8635 CTGGTGCTGTTATCCCTA-CATCTAACGCGATCGGTTTACACTTCTACCCAATTTGGGAA 8577 Query 19751 GCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCAC 19810 || ||| ||||| || ||| | |||||||| || || | |||| | | || | |||| Sbjct 8576 GCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCAC 8517 Query 19811 TTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATC 19862 ||| || | || |||| ||||||||| || ||||||||| ||| || || Sbjct 8516 TTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAA-TTATCTTTC 8466 >seq681 Length=27805 Score = 111 bits (122), Expect = 5e-20 Identities = 131/175 (75%), Gaps = 8/175 (5%) Strand=Plus/Minus Query 20037 TGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGA 20096 ||| | ||||||||||| | ||||| |||||||| |||||||| ||| ||||| ||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 20097 TGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAG- 20155 |||||||||| | || || || || | | ||||| || ||||| | ||| |||| Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAA--TCAGC 3144 Query 20156 -AACTATGGTTACAAGTTTGGGCAAGAAGA----AGAGACCTATAACATCGTAGC 20205 ||| |||||||||||| || ||||| || ||| || || ||||||||||| Sbjct 3143 TAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148824323322714