Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq1186 309 9e-80 seq681 100 8e-17 >seq1186 Length=9024 Score = 309 bits (342), Expect = 9e-80 Identities = 336/446 (75%), Gaps = 0/446 (0%) Strand=Plus/Minus Query 29164 ATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCA 29223 |||||||| ||||||||| | || |||||||| || || ||||| || |||| || Sbjct 5898 ATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 5839 Query 29224 ATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAG 29283 ||||||||||| | || || || || | | ||||| || |||||| || || Sbjct 5838 ATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCT 5779 Query 29284 AACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGT 29343 ||| |||||||||||| || ||||||||||| ||||| ||||||||||| || |||||| Sbjct 5778 AACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 5719 Query 29344 TACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTC 29403 |||||||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||| Sbjct 5718 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTC 5659 Query 29404 TTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATG 29463 ||| | ||||| ||||| || ||| | |||||||| | || || || | || || ||| Sbjct 5658 TTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTATG 5599 Query 29464 GCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTC 29523 || || || | ||||| || ||||| |||||||| || | ||| | |||||||| Sbjct 5598 GCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTGTA 5539 Query 29524 ATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAG 29583 | || ||||||||||| | |||| || |||||| | || | || ||||||||||| Sbjct 5538 TTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATGAA 5479 Query 29584 CGTAATGCTCATAACTTCCCACTTGA 29609 ||||| ||||| |||||||| || || Sbjct 5478 CGTAACGCTCACAACTTCCCTCTAGA 5453 Score = 150 bits (166), Expect = 5e-32 Identities = 248/351 (71%), Gaps = 5/351 (1%) Strand=Plus/Minus Query 28642 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 28701 ||| ||||||| || | |||||| | || | || ||||| || | ||||| || Sbjct 8813 TGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCT 8754 Query 28702 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGA 28760 ||| | |||| || |||| ||||| || |||||||| || || || || ||||| Sbjct 8753 ACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCCTCCTGTTGA 8695 Query 28761 CATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATC 28820 ||| ||||| ||||| || || || |||| | | || || ||||||||||| | Sbjct 8694 CATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAACATCATCAC 8635 Query 28821 GGGAGCCGTCGTACCGAGCAGC-AATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 28879 || || || | || | || | || || ||||| |||||||||||||||||||||||| Sbjct 8634 TGGTGCTGTTATCCCTA-CATCTAACGCGATCGGTTTACACTTCTACCCAATTTGGGAAG 8576 Query 28880 CTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 28939 | ||| ||||| || ||| | |||||||| || || | |||| | | || | ||||| Sbjct 8575 CAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACT 8516 Query 28940 TCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATC 28990 || || | || ||| ||||||||| || ||||||||| ||| || || Sbjct 8515 TCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAA-TTATCTTTC 8466 Score = 80.6 bits (88), Expect = 8e-11 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 28999 ATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTC 29058 ||| | || ||||| ||| || ||||| ||||| || || || ||| |||| || ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 29059 CTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTA 29110 || ||||||| |||||||||||||||| |||| |||||||| |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 100 bits (110), Expect = 8e-17 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 29165 TGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAA 29224 ||| | ||||||||||| | || |||||||| || |||||||| || |||| |||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 29225 TGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGA 29284 |||||||||| | || || || || | | ||||| || ||||| || || | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 29285 ACTATGGTTACAAGTTTGGACAAGAAGA----AGAGACTTATAACATCGTAGC 29333 || |||||||||||| || ||||| || ||| ||||| ||||||||||| Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146661188390418