Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq1186 311 2e-80 seq681 95.1 3e-15 >seq1186 Length=9024 Score = 311 bits (344), Expect = 2e-80 Identities = 346/462 (75%), Gaps = 0/462 (0%) Strand=Plus/Minus Query 19246 AACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTA 19305 || ||| | |||||||| ||||||||| | ||||| |||||||| || || || ||| || Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 19306 TTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAG 19365 || || ||||||||||| | || || || || | | |||||||| |||||| | Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 19366 GTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCT 19425 | ||| ||| ||| |||||||| || ||||||||||| ||||| ||||| || ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 19426 GCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCT 19485 || || || || |||||||| | || ||||| ||||| || |||||||| ||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 19486 CTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTA 19545 |||| ||||| || ||||||||||| || || | ||||||||| | || | || || Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 19546 AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAAT 19605 || ||||| |||||||| || || || ||||| |||||||| || | ||| | Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| | | |||||||||||||| |||| ||||||||| | || | |||||| Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||| |||||||| ||||| |||||||| || || || ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCT 5446 Score = 181 bits (200), Expect = 3e-41 Identities = 271/375 (72%), Gaps = 10/375 (3%) Strand=Plus/Minus Query 18712 CCTTGGGACTCTTTT-TGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTG 18770 |||| || ||| ||| || || ||| | || ||| || |||||| | || ||||| || Sbjct 8835 CCTTTGGGCTCGTTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTG 8776 Query 18771 GTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCT 18829 ||| || | ||||| || ||| | |||||||| | ||| ||||| || || | Sbjct 8775 GTTCGGTGTTATCATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCAT 8717 Query 18830 TCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTC 18889 |||| ||||| |||||||| ||||| ||||| ||||| ||||| ||| | || || | Sbjct 8716 TCATCGCTGCTCCTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGT--TCATT 8659 Query 18890 TTTAT--GGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGC-AATGCCATCGGAC 18946 |||| || ||||||||||| | || || || | || | || | || || ||||| Sbjct 8658 ATTATACGGTAACAACATCATCACTGGTGCTGTTATCCCTA-CATCTAACGCGATCGGTT 8600 Query 18947 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 19006 ||||||||||||||||||||||||| ||| ||||| || ||| | |||||||| || | Sbjct 8599 TACACTTCTACCCAATTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTC 8540 Query 19007 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 19066 | | |||| | | || | ||||||| || | || ||| ||||||||| || |||| Sbjct 8539 CTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGT 8480 Query 19067 GGGAACTTAGCTATC 19081 ||||| ||| || || Sbjct 8479 GGGAA-TTATCTTTC 8466 >seq681 Length=27805 Score = 95.1 bits (104), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 19256 TGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGA 19315 ||| | ||||||||||| | ||||| |||||||| ||||| || ||| |||| ||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 19316 TGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGA 19375 |||||||||| | || || || || | | |||||||| ||||| | | ||| | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 19376 ACTATGGCTACAAGTTTGGGCAAGAAGA----AGAGACTTATAACATTGTTGC 19424 || ||| |||||||| || ||||| || ||| ||||| ||||| || || Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141144554332314