Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 >seq7 Length=421595 Score = 118 bits (130), Expect = 1e-21 Identities = 170/236 (72%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGATTTC 147518 ||||| |||||||| ||||| || || ||||| || || ||| |||||| |||||| || Sbjct 313454 GCGATGGACGCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCG-TGTACTCCACGATCTC 313396 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | |||||||||| ||| || ||| |||| || ||||| || || || ||||| Sbjct 313395 AGTGCACAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGACTTGCGGTTGCA 313336 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635 || ||| ||| | ||||||||||| ||| ||||||| |||| || | ||| || Sbjct 313335 CGAGTCCTTGTACAGCATGTACGGGTTGCCCGTCTCGATCTGCGCCTCGAGGATGGCGAA 313276 Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACC 147691 || ||| | |||||| ||||| || || ||| ||||| |||||||||| Sbjct 313275 CC---ACAGCTGCTGCGCGCGCACGACCTTGCGTGCGCGACCCTCCTTTTCGTACC 313223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596109297880