Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq67 98.7 1e-15 seq2326 89.7 5e-13 seq533 89.7 5e-13 seq503 89.7 5e-13 seq493 89.7 5e-13 seq2016 86.0 6e-12 >seq7 Length=421595 Score = 104 bits (114), Expect = 2e-17 Identities = 231/346 (67%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || ||||||||| |||||||||| |||||||| ||| || ||||| || |||||| | Sbjct 312153 CAGCACATGCTGATGCGCGTGGCCGTGGGCATCCACAAGGATGACATCGATGCCGCCATC 312212 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 | |||||||| | |||||| | ||| |||||||| || |||||| | || | Sbjct 312213 AACACGTACCACCTCATGTCTGAGCGCTGGTTCACGCACGCCTCCCCCACCCTCTTCAAC 312272 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG- 7742 | ||||| | || || ||||||| || || || | || || |||| | Sbjct 312273 TCCGGCACCCCCCGCCCCCAGCTGTCCTCCTGCTTCCTGGTG----TGTGCCAAGAACGA 312328 Query 7743 ---CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGG 7799 |||||||||||| || ||||||| || || || || ||||| | | ||| Sbjct 312329 TTCCATCGACGGCATCTATGACACGCTCAAGGAGTGTGCTGTGATCTCCAAGTCGGCCGG 312388 Query 7800 CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAA 7859 ||| || || || | | || || | || |||| ||| |||| |||||| Sbjct 312389 CGGCATCGGCCTCTCCATCCACAACATACGTGCCACCGGCTCGTACATCCGCGGCACCAA 312448 Query 7860 CGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAAC 7905 ||| | ||| |||| | | ||||||| ||||||| |||||| || Sbjct 312449 CGGTACCTCCAACGGTGTTGTGCCCATGCTGCGCGTCTTCAATGAC 312494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 8840 TGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAA 8899 ||||||| |||||| || |||| |||||||||||| | || | || || |||| | Sbjct 314166 TGCGCAACTCGCTGCTGCTGGCGCCCATGCCCACCGCATCCACCTCCCAGATTCTGGGTA 314225 Query 8900 ACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCG 8959 ||||||| | ||||||||| | |||| |||| | |||||| | || ||| || | |||| Sbjct 314226 ACAACGAGTGCTTTGAGCCCTACACCTCCAACATCTACGTGCGCCGCGTGCTGTCGGGCG 314285 Query 8960 ATTT 8963 | || Sbjct 314286 AGTT 314289 >seq67 Length=188910 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| || ||||| ||||| || |||||||||||| | | |||| | Sbjct 176522 AGGCGCAGCACGAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 176581 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| ||||| || | |||||||| || ||||| |||||| Sbjct 176582 CCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGCGGGATGCCT 176638 >seq2326 Length=1360 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||||| ||||| || |||||||||||| | | |||| | Sbjct 655 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 714 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| |||||||| || || || |||||| Sbjct 715 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 771 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||||| ||||| || ||||||||||| | | |||| | Sbjct 1024 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 1083 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| |||||||| || || || |||||| Sbjct 1084 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 1140 >seq533 Length=40786 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||||| ||||| || |||||||||||| | | |||| | Sbjct 40484 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 40543 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| |||||||| || || || |||||| Sbjct 40544 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 40600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| ||||| |||||||| ||||| || ||||||||||| | | |||| | ||| || Sbjct 40115 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTC 40174 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||||| ||||| || || |||| |||||||| || || || |||||| Sbjct 40175 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 40223 >seq503 Length=44646 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||||| ||||| || ||||||||||| | | |||| | Sbjct 44626 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 44567 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| ||||| |||| |||||||| || || || |||||| Sbjct 44566 CCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 44510 >seq493 Length=45929 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||||| ||||| || |||||||||||| | | |||| | Sbjct 45690 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 45631 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| |||||||| || || || |||||| Sbjct 45630 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCT 45574 >seq2016 Length=2168 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||||| ||||| || |||||||||||| | | |||| | Sbjct 1449 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 1508 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| |||||||| || || || || ||| Sbjct 1509 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATACCT 1565 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||||| ||||| || |||||||||||| | | |||| | Sbjct 1830 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 1889 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || || |||| |||||||| || || || || ||| Sbjct 1890 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATACCT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505382397823160