Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1134 574 5e-159 seq1186 365 5e-96 seq681 102 9e-17 >seq1134 Length=9887 Score = 574 bits (636), Expect = 5e-159 Identities = 739/1017 (73%), Gaps = 2/1017 (0%) Strand=Plus/Minus Query 159376 TGGTTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 159435 ||||| |||| | ||||||||| | | ||| || || || || || |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 159436 GGACTCCTACTTCTTCCCAC-TGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGAC 159494 || | || || |||||| |||||| | || | || |||||| | ||||| || || Sbjct 7876 GGTTTATTA-TTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 159495 TTTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTT 159554 ||| | || |||||||| || ||| | || | ||| ||| | |||||| ||| || Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 159555 TCTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 159614 | || |||||||| ||||| |||||| | |||||| || || |||||| | | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 159615 GGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTT 159674 ||||||||| | ||||| || || ||| |||| |||||| || || | ||| | || Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 159675 TGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGC 159734 || ||| | |||||||| || | | | || ||||| ||| |||| |||||||||||||| Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 159735 TCGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT 159794 ||| || | ||||||||||| || || || ||||| | || ||| |||| || Sbjct 7577 GCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATT 7518 Query 159795 TGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTT 159854 || |||||| | || || || | ||||| || |||||||| ||||| ||||| Sbjct 7517 CGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTT 7458 Query 159855 CGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCT 159914 || || ||||||||||| | || | | ||| | |||||||||||||||||||| || Sbjct 7457 TGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCT 7398 Query 159915 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAAT 159974 ||||| ||||| |||||||| ||||||||| | |||||| || | || |||||||| Sbjct 7397 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAAT 7338 Query 159975 CCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAA 160034 || ||||| |||||||| |||||||| || |||||||| || || ||||| || Sbjct 7337 TCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCG 7278 Query 160035 GGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 160094 || || | || || |||| ||||| ||||| || ||||| ||||| ||| | ||||| Sbjct 7277 TGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTG 7218 Query 160095 GTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 160154 ||| ||||| |||||||| || ||| ||||||| || ||| | || || |||||| | || Sbjct 7217 GTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATT 7158 Query 160155 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCT 160214 || || |||| ||||| |||| | ||||| | ||||| | ||||| ||||| Sbjct 7157 CGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCT 7098 Query 160215 TCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGAC 160274 | || || ||||| || |||||| || |||| || ||||||||||| ||||| || Sbjct 7097 AAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAAC 7038 Query 160275 CTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGA 160334 ||||| || || || ||| |||| |||||||| ||||||| |||||||| || || Sbjct 7037 ATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGA 6978 Query 160335 TCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 |||||||| ||| || | |||||||| |||||| ||||| | |||||||| || Sbjct 6977 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 6921 >seq1186 Length=9024 Score = 365 bits (404), Expect = 5e-96 Identities = 363/470 (77%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 158198 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158257 || ||| | |||||||| ||||| ||| | ||||||||||| ||||| ||||| || | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 158258 TTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 158317 ||||| |||||||| || | || ||||| || | | |||||||| ||||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 158318 GAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCA 158377 || ||| ||| ||||| |||||||||||||||||||| || ||||||||||| || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 158378 GCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCC 158437 || || || ||||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 158438 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTG 158497 || ||||||||| | ||||| ||||| ||||| | || ||||| || || | || | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 158498 TCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 158557 ||||| ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 158558 GGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTT 158617 |||||||| || ||||| ||||| || | | ||||| ||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 158618 ATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTGCTGA 158667 |||||||| |||||||| ||||||||||| || || | ||| ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 298 bits (330), Expect = 6e-76 Identities = 288/367 (78%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 |||||||||||| | || || || | |||||||| || | |||||||||||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157794 ||||| ||||| | | | || ||| ||||| |||||| |||| ||| |||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 ||||| ||||| || || ||||| || |||||| |||||||| | | || |||||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 ||||||| ||||||| ||| | |||| || ||||| |||||| | ||||||||||| || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 ||||||||||| ||||||||||||||| | || ||||||||||||| |||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 | ||||||| | | || |||| || ||||| |||||||||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 158035 TTTAGGT 158041 ||||||| Sbjct 8463 TTTAGGT 8457 Score = 109 bits (120), Expect = 6e-19 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 158025 TCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTG 158084 ||| ||| | ||| | ||||| ||||||||| ||| || || ||||||||||| |||| Sbjct 8184 TCTATTAACATTTTG--ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTG 8127 Query 158085 CAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGC 158144 | || | ||| |||||| | |||| ||| ||||||||||||||||||| || | ||||| Sbjct 8126 CTGCAACTGCTGTATTCATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGC 8067 Query 158145 CTCTTGGTA 158153 || | |||| Sbjct 8066 CTTTAGGTA 8058 >seq681 Length=27805 Score = 102 bits (112), Expect = 9e-17 Identities = 127/174 (73%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 158208 TGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTA 158267 ||| | ||||||| ||| | ||||||||||| || |||||||| || | |||||||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 158268 TGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGA 158327 |||| || | || ||||| || | | |||||||| ||||| | || ||| | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 158328 ACTACGGTTATAAGTTCGGTCAAGAAGA----AGAGACCTACAACATCGTTGCA 158377 || ||||| |||||||||||||| || ||| || ||||||||||| ||| Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573005856627600