Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1134 473 1e-128 seq1186 369 4e-97 seq681 113 5e-20 >seq1134 Length=9887 Score = 473 bits (524), Expect = 1e-128 Identities = 706/993 (71%), Gaps = 8/993 (1%) Strand=Plus/Minus Query 161718 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCAC-TGCTTATCTTGC 161776 || |||||||| || || || ||||| || || || || |||||| |||||| |||| Sbjct 7903 GACCGTTTCGTATTCGTAGGTTGGTCAGGT-TTATTATTATTCCCATGTGCTTACTTTGC 7845 Query 161777 TATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCGC 161836 | || |||||| | ||||| ||||| || | || ||||| || |||||| | || Sbjct 7844 ATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATGGTACACACATGGTTTAGC 7785 Query 161837 TAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGC 161896 | ||| || | || ||| ||||| | ||||| | ||| ||||| ||| || Sbjct 7784 AACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTTTCAACTCCTGCTAACAG 7725 Query 161897 TATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTG 161956 |||||| || || |||||| || | ||||||||||| || ||||| ||||| || || Sbjct 7724 TATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCAAGGTGATTTAACACGTTG 7665 Query 161957 GGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGG 162016 | ||||||| || || | ||| ||| || || | || ||||| || | |||| || Sbjct 7664 GTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGGTGCGTTTGGTTTAATCGG 7605 Query 162017 ATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTAT 162076 |||||| | ||||| |||||| | || ||| | | | ||||| ||||| || || Sbjct 7604 TTTCATGTTACGTCAATTTGAAATTGCGCGTTCTGTAAACTTACGTCCTTACAACGCAAT 7545 Query 162077 TGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCA 162136 || ||||| | || ||| |||| || || || ||| | || ||||| || ||||| Sbjct 7544 CGCTTTCTCAGCACCAATTTCTGTATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCA 7485 Query 162137 GTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGT- 162195 || ||||||| ||||| || ||||| || ||||||||||| | || | || | Sbjct 7484 ATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAGCAATCTTCCGTTT--TATTCTA 7427 Query 162196 TTCTTCAAGGATT-CCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGT 162254 |||||| ||| || ||| |||||||| || ||||| ||||| |||||||| ||||||||| Sbjct 7426 TTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCCACATGATGGGTGTTGCTGGT 7367 Query 162255 ATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATAC 162314 | |||||| || | ||| ||| |||||||| | || || ||||| ||||||| | Sbjct 7366 GTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAACTGTAGAAAACACATTATTC 7307 Query 162315 GAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACT 162374 || ||||| || || ||||| || || || | | ||||| | ||||| ||| Sbjct 7306 GAAGATGGTGATGGTGCTAACACTTTCCGTGCTTTCAACCCAACACAAGCTGAAGAAACT 7247 Query 162375 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAAC 162434 || || ||||| ||||| ||| | |||||||| ||||| |||||| | || ||| ||||| Sbjct 7246 TACTCAATGGTAACTGCTAACAGATTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAAC 7187 Query 162435 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCT 162494 || || ||| | || || |||||| | || || || |||| ||||| |||| | Sbjct 7186 AAACGCTGGTTACACTTCTTCATGCTATTCGTACCAGTTACTGGTCTTTGGATGAGTGCA 7127 Query 162495 ATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATC 162554 ||||| | ||||| | ||| | ||||| | || || ||||| || |||||| ||| Sbjct 7126 ATTGGGGTGATTGGCTTAGCTTTAAACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATC 7067 Query 162555 AGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAA 162614 |||| || |||||||||||||||||||| ||||| || || || || | | |||||| Sbjct 7066 CGAGCTGCCGAAGATCCTGAGTTTGAAACATTCTATACAAAAAATATCTTATTAAATGAA 7007 Query 162615 GGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTA-TCTTCCCAGA 162673 || | ||||| ||| | || || |||||||| || || | |||| | ||||| || Sbjct 7006 GGTATTCGTGCGTGGATGGCTGCTCAAGACCAACCACACGA-ACGTTTAGTATTCCCTGA 6948 Query 162674 AGAAGTTCTTCCTAGAGGCAACGCCCTTTAATA 162706 |||||| | ||| | || ||||| |||||||| Sbjct 6947 AGAAGTATTACCTCGTGGTAACGCTCTTTAATA 6915 >seq1186 Length=9024 Score = 369 bits (408), Expect = 4e-97 Identities = 366/471 (78%), Gaps = 2/471 (0%) Strand=Plus/Minus Query 160482 AATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTG 160541 |||||| | ||||| || ||||||||| | || |||||||| ||||| ||||| || || Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 160542 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 160601 ||||| ||||||||||| | || ||||| || | | |||||||| ||||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 160602 GAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCA 160661 || ||| ||| ||||| |||||||||||||| ||||| || ||||||||||| || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 160662 GCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCA 160721 || || |||||||| |||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 160722 CTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTT 160781 | ||||||||| | || || ||||| || || | || ||||| || ||| | ||| || Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGT-TT 5609 Query 160782 AGCACC-ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCA 160840 | || | ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5608 ATCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCA 5549 Query 160841 AGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGT 160900 |||||||||| | ||||| ||||| ||| | | || |||||| | |||||||| || Sbjct 5548 AGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGT 5489 Query 160901 TATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGA 160951 |||||||| |||||||| ||||||||||| || ||| | ||| ||| ||| Sbjct 5488 AATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 273 bits (302), Expect = 2e-68 Identities = 283/368 (77%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 ||||||||||||| | |||||||| | ||||| | || ||||||||||||| || | Sbjct 8823 TTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTAT 8764 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 ||||| || ||||| || |||| || ||||| |||||| |||| ||| ||||||||| Sbjct 8763 CATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTC 8705 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | ||||| |||||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 8704 CTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACA 8645 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 |||||||| ||||||| ||| | || | || ||||| || ||| | |||||||| || | Sbjct 8644 ACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAA 8585 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | |||||||| || || ||||| |||||| | || ||||||||||||| |||| | | | Sbjct 8584 TTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 8525 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACC 160317 | | |||||| | | || |||| || ||||| |||||||||||| | || | || Sbjct 8524 TTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 160318 GTTTAGGT 160325 |||||||| Sbjct 8464 GTTTAGGT 8457 Score = 113 bits (124), Expect = 5e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 160326 ATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTC 160385 ||||| || |||||| ||| || || ||||||||||| ||||| ||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 160386 CTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160437 || | || ||| ||||||||||||||||||| || | ||||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 113 bits (124), Expect = 5e-20 Identities = 126/168 (75%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 160498 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 160557 ||||||||||| | || |||||||| || |||||||| || || |||||||| |||||| Sbjct 3255 CGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACG 3196 Query 160558 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 160617 | | || ||||| || | | |||||||| ||||| | || ||| ||| | Sbjct 3195 GTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTG 3136 Query 160618 GTTATAAGTTCGGTCAAGAGGA----AGAGACCTACAACATCGTCGCA 160661 |||| ||||||||||||||||| ||| || ||||||||||| ||| Sbjct 3135 GTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559486284704600