Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1134 473 1e-128 seq1186 354 1e-92 seq681 125 9e-24 >seq1134 Length=9887 Score = 473 bits (524), Expect = 1e-128 Identities = 720/1019 (71%), Gaps = 6/1019 (1%) Strand=Plus/Minus Query 182358 TGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCT 182417 |||||||||| | || |||||| | | || || || || || || |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 182418 GGACTCCTACTTCTTCCCAC-TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGC 182476 || | || || |||||| |||||| |||| | || |||||| | ||||| ||| | Sbjct 7876 GGTTTATTA-TTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 182477 TTTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTT 182536 |||||||| |||||||| || ||| | || |||| || | |||||| |||||| Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 182537 TCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 182596 | || |||||||| || || |||||| | |||||| || || |||||| | | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 182597 GGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTT 182656 ||||||||| | || || |||| || |||| |||||| || || | ||| ||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 182657 CGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGC 182716 ||| ||| | |||||||| || | | | || ||||||||| | | ||||||||| |||| Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 182717 TCGC-CTGATTGGAATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTA 182774 || ||| | | | | | |||||||| || || ||||| || | || ||| ||||| Sbjct 7577 GCGTTCTG--TAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTA 7520 Query 182775 TTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCC 182834 ||||| ||| ||| | || || ||||| || || || |||||| ||||| || Sbjct 7519 TTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGT 7460 Query 182835 TTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACA 182894 |||||||| || || |||||| | || | | ||| | |||||||||||||||||||| Sbjct 7459 TTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACT 7400 Query 182895 CTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCT 182954 || ||||| ||||| |||||||| ||||||||| | | |||| || | | |||| Sbjct 7399 CTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCA 7340 Query 182955 ATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTT 183014 || || |||| || ||||| || || || | |||||||| || || ||||| || Sbjct 7339 ATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTC 7280 Query 183015 AAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTT 183074 || ||| | | || || | || || || || || ||||| || || || | || Sbjct 7279 CGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTC 7220 Query 183075 TGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTG 183134 |||||||| || ||||| || || ||| || || || ||||| |||||||| ||| | Sbjct 7219 TGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTA 7160 Query 183135 TTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAAT 183194 || || || || | ||||||||| | | | |||||| | ||||| | ||| | || Sbjct 7159 TTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAAC 7100 Query 183195 CTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAG 183254 || | || ||||||||||| ||| || || |||| || |||||||||||||| || Sbjct 7099 CTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAA 7040 Query 183255 ACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCC 183314 || ||||| ||||| || ||| | | |||||||| | ||||| ||| |||| || Sbjct 7039 ACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAA 6980 Query 183315 GATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 || |||||||| ||| || | |||||||||||||| ||||| | |||||||| || Sbjct 6979 GACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 6921 >seq1186 Length=9024 Score = 354 bits (392), Expect = 1e-92 Identities = 346/446 (78%), Gaps = 0/446 (0%) Strand=Plus/Minus Query 181512 ATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCA 181571 ||||| || ||||||||||| ||||| || |||||||||||||||||| | ||| || Sbjct 5898 ATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 5839 Query 181572 ATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAG 181631 ||||||||||| || || || ||||| | ||||||| || ||||||| || ||| Sbjct 5838 ATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCT 5779 Query 181632 AACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGT 181691 ||| ||||||||||||||| ||||||||||| || ||||||||||| || || |||||| Sbjct 5778 AACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 5719 Query 181692 TACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTC 181751 ||||||||||| || ||||||||||| ||||||||||||||||| |||||| | |||||| Sbjct 5718 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTC 5659 Query 181752 TTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATG 181811 ||| | || || ||||| || || | || ||||| || || | || || || ||| Sbjct 5658 TTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTATG 5599 Query 181812 GCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTC 181871 || || ||| | || || ||||||||||||||||| | | ||| ||||| ||||| Sbjct 5598 GCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTGTA 5539 Query 181872 CTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAG 181931 | ||||| ||||| ||| | |||||||||| | || ||||| || ||||| || Sbjct 5538 TTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATGAA 5479 Query 181932 CGCAACGCGCACAACTTCCCGCTTGA 181957 || ||||| ||||||||||| || || Sbjct 5478 CGTAACGCTCACAACTTCCCTCTAGA 5453 Score = 273 bits (302), Expect = 3e-68 Identities = 283/368 (77%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 ||||||||||||| | |||||||| | ||||| | || ||||||||||||| || | Sbjct 8823 TTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTAT 8764 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 ||||| || ||||| || |||| ||| ||||| |||||| |||| ||| ||||||||| Sbjct 8763 CATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTC 8705 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | ||||| |||||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 8704 CTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACA 8645 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 |||||||| ||||||| ||| | || | || ||||| || ||| | |||||||| || | Sbjct 8644 ACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAA 8585 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 | |||||||| || || ||||| |||||| | || ||||||||||||| |||| | | | Sbjct 8584 TTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 8525 Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACC 181338 | | |||||| | | || || | |||||||| ||||| |||||| | |||| || Sbjct 8524 TTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 181339 GCTTAGGT 181346 | |||||| Sbjct 8464 GTTTAGGT 8457 Score = 116 bits (128), Expect = 5e-21 Identities = 88/104 (85%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 181347 ATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTC 181406 ||||| || |||||| |||||| |||||||||||||| || || ||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 181407 CTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCC 181450 | |||| ||| |||||||||||||||||||||||| ||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCC 8066 >seq681 Length=27805 Score = 125 bits (138), Expect = 9e-24 Identities = 127/165 (77%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 181521 TTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGT 181580 ||||||||||| ||||| || ||||| || ||||||||| | ||| |||| |||||||| Sbjct 3253 TTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCATTGCACGGT 3194 Query 181581 TCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGT 181640 || || || || ||||| | ||||||| || ||||| | || ||| ||| |||| Sbjct 3193 TCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTAACGCTGGT 3134 Query 181641 TACAAGTTCGGACAAGAAGA----AGAGACATACAACATCGTCGC 181681 ||||||||||| ||||| || ||| || ||||||||||| || Sbjct 3133 TACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614598139670240