Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1134 461 1e-124 seq1186 399 3e-106 seq681 129 9e-25 >seq1134 Length=9887 Score = 461 bits (510), Expect = 1e-124 Identities = 691/971 (71%), Gaps = 18/971 (2%) Strand=Plus/Minus Query 175899 GGCTGGTCTGGATTACTACTTCTTCCCAC-TGCTTATCTTGCCATTGGCGGCTGGCTTAC 175957 || ||||| || ||| || || |||||| |||||| |||| | || || ||| | || Sbjct 7885 GGTTGGTCAGGTTTATTA-TTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAAC 7827 Query 175958 TGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG 176017 ||| ||||| ||||| || |||||||| |||||| | || |||| || | || || Sbjct 7826 TGGTACAACATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGG 7767 Query 176018 TGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCT 176077 | |||||| | ||||| ||||| || ||||||||| | |||||| || || ||||| Sbjct 7766 TTGTAACTTCTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCT 7707 Query 176078 TCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCT 176137 | | | |||||||||||| | || || || || || ||| ||||||| || || | Sbjct 7706 TTTTGTATGGGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTT 7647 Query 176138 TTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTT 176197 ||| | || || ||| | |||||||| || | | | || || |||||| | ||||| || Sbjct 7646 ATGGCCTTTCGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATT 7587 Query 176198 TGAACTGGCAAGACTCATTGGTATC---CGTCCCTACAACGCTATTGCATTCAGTGGTCC 176254 |||| | || | || || | | ||||| |||||||| || || ||| | || Sbjct 7586 TGAAATTGCGCGT-TC--TGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACC 7530 Query 176255 TATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTT 176314 || ||||||| || ||| || | | ||||| |||||||||| |||||||| Sbjct 7529 AATTTCTGTATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTT 7470 Query 176315 TGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGT-TTCTTC-AGGGTTTC 176372 || || |||||||| ||||||||||| | || |||| | |||||| |||||||| Sbjct 7469 CGCACCAAGTTTTGGTGTTGCAGCAATCTTCCGTTT--TATTCTATTCTTCCAGGGTTTC 7412 Query 176373 CACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCA 176432 ||||||||||| || ||||| ||||| |||||||| ||||||||| | |||||| || Sbjct 7411 CACAACTGGACTCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCT 7352 Query 176433 CTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAG 176492 || ||| |||||| || || | ||||| ||||| || ||| |||||||| || Sbjct 7351 TTATTATGTGCAATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGT 7292 Query 176493 AACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACT 176552 ||||| ||| ||| ||| | | || || | ||||| || || || ||||| ||| Sbjct 7291 GCTAACACTTTCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACT 7232 Query 176553 GCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCAC 176612 || ||| | |||||||| || || ||||| || || ||| ||| || || ||| | ||| Sbjct 7231 GCTAACAGATTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACAC 7172 Query 176613 TTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGT---ATTGGCATCATT 176669 ||||| ||| | || || || || | ||||||||| | ||| ||||| | ||| Sbjct 7171 TTCTTCATGCTATTCGTACCAGTTACTGGTCTTTGGATG---AGTGCAATTGGGGTGATT 7115 Query 176670 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAA 176729 || | ||| | || || | || ||||||||||| || || || |||| || ||| Sbjct 7114 GGCTTAGCTTTAAACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAA 7055 Query 176730 GATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCA 176789 ||||||||||||||||| ||||| ||||| || ||| | | || ||||| | | || Sbjct 7054 GATCCTGAGTTTGAAACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCG 6995 Query 176790 TGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCT 176849 |||||||| || || |||||||| || || |||||||| |||||||| ||||| Sbjct 6994 TGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCT 6935 Query 176850 AGAGGTAACGC 176860 | |||||||| Sbjct 6934 CGTGGTAACGC 6924 >seq1186 Length=9024 Score = 399 bits (442), Expect = 3e-106 Identities = 365/461 (79%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 174990 AACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTG 175049 || ||||| |||||||| ||||||||||| || || || ||||| || ||||||||||| Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 175050 TTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACT 175109 |||||||| ||||| |||||| | || || ||||| | ||||||| |||||||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 175110 GAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCA 175169 || ||| ||| ||||||||||||||| ||||||||||| || || |||||||| || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 175170 GCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCA 175229 || || || ||||| |||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 175230 CTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTT 175289 | |||||||||||||| || ||||||||||| |||| ||||| || || | ||| | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 175290 TCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAA 175349 || || ||||| |||||| | || || ||||||||||||||||| ||| | ||| ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 175350 GGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTA 175409 ||| | ||||| ||||| ||||| || | | ||| | ||| | || ||||| ||| Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 175410 ATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 |||||||| | || || ||||||||||| ||||| || || Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGC 5447 Score = 288 bits (318), Expect = 1e-72 Identities = 280/358 (78%), Gaps = 2/358 (1%) Strand=Plus/Minus Query 174477 TGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCT 174536 ||| |||| || || | || ||| | ||| ||||||||||||||||| | ||||| ||| Sbjct 8813 TGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCT 8754 Query 174537 ACATTGTTAGCCGCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGA 174595 || | ||| | || ||| | ||| ||||| ||||| ||| | | |||||| || || || Sbjct 8753 ACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCCTCCTGTTGA 8695 Query 174596 CATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTC 174655 |||||| || |||||||| ||||| |||||||| | | || || |||||||||||| | Sbjct 8694 CATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAACATCATCAC 8635 Query 174656 TGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGC 174715 |||||| ||| | |||| || ||||| |||||| |||||||||||||||| |||||||| Sbjct 8634 TGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATTTGGGAAGC 8575 Query 174716 AGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTT 174775 ||| | || ||||| ||| | |||||||||||||||| |||| || | || | |||||| Sbjct 8574 AGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTT 8515 Query 174776 CCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGT 174833 | | | ||||||| | || ||||| |||||||||||| | |||| ||||||||| Sbjct 8514 CTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCGTTTAGGT 8457 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 174817 TCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAG 174876 ||| ||| | ||| | ||| | || |||||| ||| || |||||||| ||||| || | Sbjct 8184 TCTATTAACATTTTG--ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTG 8127 Query 174877 CAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGC 174936 | || | || |||||| | |||| ||| ||||||||||||| ||||| |||| |||| Sbjct 8126 CTGCAACTGCTGTATTCATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGC 8067 Query 174937 CCTTGGGTA 174945 | || |||| Sbjct 8066 CTTTAGGTA 8058 >seq681 Length=27805 Score = 129 bits (142), Expect = 9e-25 Identities = 135/177 (76%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 174997 TGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAG 175056 || ||| | | ||||||||||| || || || ||||| |||||||||||||| ||||| | Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 175057 CGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCAC 175116 | |||| |||||| | || || ||||| | ||||||| |||||||| | || ||| Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 175117 AGAACTATGGTTACAAGTTCGGCCAAGAAGA----AGAGACCTATAACATCGTGGCA 175169 ||| ||||||||||||||| ||||| || ||| || || |||||||| ||| Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729906488604040