Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1134 464 8e-126 seq1186 349 4e-91 seq681 134 2e-26 >seq1134 Length=9887 Score = 464 bits (514), Expect = 8e-126 Identities = 715/1015 (70%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 179220 TGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCT 179279 |||||||||| | || |||||| | | || || || || || || |||||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 179280 GGACTCCTACTTCTTCCCAC-TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGC 179338 || | || || |||||| |||||| |||| | || |||||| | ||||| ||| | Sbjct 7876 GGTTTATTA-TTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 179339 TTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTT 179398 |||||||| |||||||| || ||| | || | ||| || | || ||| |||||| Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 179399 TCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 179458 | || |||||||| || || |||||| | |||||| || || |||||| | | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 179459 GGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTT 179518 ||||||||| | || || |||| || |||| |||||| || || | ||| ||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 179519 CGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGC 179578 ||| ||| | |||||||| || | | | || ||||||||| | | ||||||||| |||| Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 179579 TCGC-CTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTAT 179637 || ||| | | | |||||||| || || ||||| || | || ||| |||||| Sbjct 7577 GCGTTCTGTAAACTTAC-GTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTAT 7519 Query 179638 TCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCT 179697 |||| ||| ||| | || || ||||| || || || |||||| ||||| || | Sbjct 7518 TCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTT 7459 Query 179698 TTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGC 179757 ||||||| || || |||||| | || | || ||| | |||||||||||||||||||| | Sbjct 7458 TTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTC 7399 Query 179758 TCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTA 179817 | ||||| ||||| |||||||| ||||||||| | |||| | || | | |||| | Sbjct 7398 TTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAA 7339 Query 179818 TCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTA 179877 | || || | |||||||| || ||||| | |||||||| || || || || || Sbjct 7338 TTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCC 7279 Query 179878 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 179937 || || | | ||||| | ||||| ||||| || ||||| ||||| ||| | |||| Sbjct 7278 GTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCT 7219 Query 179938 GGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 179997 |||| ||||| |||||| | || ||| ||||||| || ||| | || || |||||| | | Sbjct 7218 GGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTAT 7159 Query 179998 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACC 180057 | || || |||| ||||| |||| | ||||| | ||||| | ||| | |||| Sbjct 7158 TCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACC 7099 Query 180058 TTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGA 180117 | | || || ||||| || |||||| ||| |||| || |||||||| |||||||| | Sbjct 7098 TAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAA 7039 Query 180118 CCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTG 180177 | ||||| || || || || | | |||||||| | ||||| ||| |||| | | Sbjct 7038 CATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAG 6979 Query 180178 ATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | |||||||| || || |||||||| |||||||| | || | ||||| || Sbjct 6978 ACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGC 6924 >seq1186 Length=9024 Score = 349 bits (386), Expect = 4e-91 Identities = 345/446 (77%), Gaps = 0/446 (0%) Strand=Plus/Minus Query 178380 ATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCA 178439 |||||||| ||||||||||| ||||| || |||||||| ||||||||| | ||| || Sbjct 5898 ATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCT 5839 Query 178440 ATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAG 178499 ||||||||||| || || || ||||| | | |||||||| ||||||| |||||| Sbjct 5838 ATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCT 5779 Query 178500 AACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGC 178559 ||| |||||| |||||||| ||||||||||| || ||||||||||| || ||||| || Sbjct 5778 AACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 5719 Query 178560 TACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTC 178619 ||||| |||||||| ||||||||||| ||||||||||||||||| |||||| | |||||| Sbjct 5718 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTC 5659 Query 178620 TTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATG 178679 ||| | || || ||||| || || | || ||||| || || | || || || ||| Sbjct 5658 TTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTATG 5599 Query 178680 GCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTC 178739 || || ||| | || || ||||||||||||||||| | | ||| ||||| ||||| Sbjct 5598 GCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGTGTA 5539 Query 178740 CTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAG 178799 | ||||| ||||| ||| | |||||||||| | || ||||| || ||||| || Sbjct 5538 TTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCATGAA 5479 Query 178800 CGCAACGCGCACAACTTCCCGCTTGA 178825 || ||||| ||||||||||| || || Sbjct 5478 CGTAACGCTCACAACTTCCCTCTAGA 5453 Score = 286 bits (316), Expect = 4e-72 Identities = 285/367 (78%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||||||||| | |||||||| | ||||| | || ||||||||||||| || | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || ||||| || |||| ||| ||||| |||||| |||| ||| |||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 ||||| |||||||| || |||||||| || || |||||||| | | || || ||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 ||||||| ||||||| ||| | || | || ||||| || ||| | |||||||| || || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| || || ||||| |||||| | || ||||||||||||| |||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||||| || | ||||||| |||||||| |||||||||||| | || | ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 178208 TTTAGGT 178214 ||||||| Sbjct 8463 TTTAGGT 8457 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 178215 ATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTC 178274 ||||| || |||||| ||| || ||||||||||||||||| || ||| | || |||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 178275 CTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCC 178318 | |||| ||| ||||||||||||| || ||||||| ||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCC 8066 >seq681 Length=27805 Score = 134 bits (148), Expect = 2e-26 Identities = 136/177 (77%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 178378 TGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTG 178437 || ||| | | ||||||||||| ||||| || ||||| |||||||||||| | ||| || Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 178438 CAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCAC 178497 || |||||||||| || || || ||||| | | |||||||| ||||| | |||||| Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 178498 AGAACTATGGTTATAAGTTCGGACAAGAAGA----AGAGACATACAACATCGTTGCA 178550 ||| |||||| |||||||| ||||| || ||| || ||||||||||| ||| Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605990412221040