Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1134 443 2e-119 seq1186 374 1e-98 seq681 102 9e-17 >seq1134 Length=9887 Score = 443 bits (490), Expect = 2e-119 Identities = 701/997 (70%), Gaps = 16/997 (2%) Strand=Plus/Minus Query 159929 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCAC-TGCTTATCTTGC 159987 || |||||||| || || || ||||| || || || || |||||| |||||| |||| Sbjct 7903 GACCGTTTCGTATTCGTAGGTTGGTCAGGT-TTATTATTATTCCCATGTGCTTACTTTGC 7845 Query 159988 TATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCGC 160047 | || |||||| | ||||| ||||| || | || ||||| || ||||| | || Sbjct 7844 ATTAGGTGGTTGGTTAACTGGTACAACATTTGTTACTTCATGGTACACACATGGTTTAGC 7785 Query 160048 TAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGC 160107 | ||| || | || ||| ||||| | ||||| | ||| ||||| ||| || Sbjct 7784 AACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTTTCAACTCCTGCTAACAG 7725 Query 160108 TATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 160167 |||||| || || |||||| || | ||||||||||| || ||||| ||||| | || Sbjct 7724 TATGGGCCACTCACTTCTTTTTGTATGGGGTCCTGAAGCGCAAGGTGATTTAACACGTTG 7665 Query 160168 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGG 160227 | ||||||| || || | ||| ||| || || | || ||||| || | |||| || Sbjct 7664 GTTCCAACTAGGTGGTTTATGGCCTTTCGTAGCTTTACACGGTGCGTTTGGTTTAATCGG 7605 Query 160228 ATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCTTACAATG 160283 |||||| | ||||| |||||| | || ||| || ||| | ||||||||||| | Sbjct 7604 TTTCATGTTACGTCAATTTGAAATTGCGCGT----TCTGTAAACTTACGTCCTTACAACG 7549 Query 160284 CTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGG 160343 | || || ||||| | || ||| |||| || || |||||| | || ||||| || | Sbjct 7548 CAATCGCTTTCTCAGCACCAATTTCTGTATTCGTATCTGTATTCTTAATTTACCCTTTAG 7489 Query 160344 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGT 160403 |||| || ||||||| ||||| || ||||| || ||||||||||| | || | Sbjct 7488 GTCAATCAGGTTGGTTCTTCGCACCAAGTTTTGGTGTTGCAGCAATCTTCCGTTTTATTC 7429 Query 160404 TGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTG 160463 | ||| | || || || ||||||||||| |||||||| ||||| |||||||| ||||||| Sbjct 7428 TATTCTTCCAGGGTTTCCACAACTGGACTCTTAACCCATTCCACATGATGGGTGTTGCTG 7369 Query 160464 GTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGT 160523 || | |||| | || | | |||| || || || | |||||||| |||||| | | Sbjct 7368 GTGTTTTAGGTGCTGCTTTATTATGTGCAATTCACGGTGCAACTGTAGAAAACACATTAT 7309 Query 160524 ATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGA 160583 |||||||| || || || || || || || | | ||||| | ||||| | Sbjct 7308 TCGAAGATGGTGATGGTGCTAACACTTTCCGTGCTTTCAACCCAACACAAGCTGAAGAAA 7249 Query 160584 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTA 160643 |||| || ||||| ||||| ||| | |||||||| ||||| |||||| | || ||| ||| Sbjct 7248 CTTACTCAATGGTAACTGCTAACAGATTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTA 7189 Query 160644 ACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGA--CATC 160701 |||| || ||| | || || |||||| | || || || |||| |||||||||| | Sbjct 7188 ACAAACGCTGGTTACACTTCTTCATGCTATTCGTACCAGTTACTGGTCTTTGGATGAGTG 7129 Query 160702 CAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGA 160761 || ||||| | ||||| | ||| | || || | || || ||||| || ||| || Sbjct 7128 CA--ATTGGGGTGATTGGCTTAGCTTTAAACCTAAGAGCCTATGATTTTGTTTCTCAGGA 7071 Query 160762 GATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAA 160821 || |||| || |||||||| || ||||| || ||||| || || || ||| || | || Sbjct 7070 AATCCGAGCTGCCGAAGATCCTGAGTTTGAAACATTCTATACAAAAAATATCTTATTAAA 7011 Query 160822 TGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTA-TCTTCC 160880 |||||| | ||||| ||| | || || |||||||| || || | |||| | |||| Sbjct 7010 TGAAGGTATTCGTGCGTGGATGGCTGCTCAAGACCAACCACACGA-ACGTTTAGTATTCC 6952 Query 160881 CAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAATA 160917 | |||||||| | ||| | || ||||| |||||||| Sbjct 6951 CTGAAGAAGTATTACCTCGTGGTAACGCTCTTTAATA 6915 >seq1186 Length=9024 Score = 374 bits (414), Expect = 1e-98 Identities = 365/470 (78%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 158901 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158960 || ||| | |||||||| ||||| ||| | ||||||||||| ||||| ||||| || | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 158961 TTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 159020 ||||| |||||||| || | || ||||| || | | |||||||| ||||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 159021 GAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCA 159080 || ||| ||| ||||||||||||||| |||||||||||||| || || ||||| || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 159081 GCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCC 159140 || || |||||||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 159141 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTG 159200 || ||||||||| | ||||| ||||| ||||| | || ||||| || || | || | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 159201 TCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 159260 ||||| ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 159261 GGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTT 159320 |||||||| || ||||| ||||| || | | |||||||| | |||||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 159321 ATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370 |||||||| |||||||| ||||||||||| || ||| | ||| ||| ||| Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 264 bits (292), Expect = 1e-65 Identities = 281/368 (76%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 ||||||||||||| | |||||||| | ||||| | || ||||||||||||| || | Sbjct 8823 TTTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTAT 8764 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 ||||| || ||||| || |||| || ||||| |||||| |||| ||| ||||||||| Sbjct 8763 CATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTC 8705 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | ||||| |||||||| || |||||||| || || |||||||| | | || ||||||| Sbjct 8704 CTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACA 8645 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 |||||||| ||||||| ||| | || | || ||||| || ||| | |||||||| || | Sbjct 8644 ACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAA 8585 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 | |||||||| || || ||||| |||||| | || ||||||||||||| |||| | | | Sbjct 8584 TTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 8525 Query 158677 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACC 158736 | | |||||| | | || |||| || ||||| ||||| |||||| | || | || Sbjct 8524 TTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 158737 GCTTAGGT 158744 | |||||| Sbjct 8464 GTTTAGGT 8457 Score = 113 bits (124), Expect = 5e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 158745 ATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTC 158804 ||||| || |||||| ||| || || ||||| ||||| ||||| ||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 158805 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158856 || |||| ||| ||||||||||||||||||| || | ||||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 102 bits (112), Expect = 9e-17 Identities = 127/174 (73%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 158911 TGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTA 158970 ||| | ||||||| ||| | ||||||||||| || |||||||| || | |||||||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 158971 TGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGA 159030 |||| || | || ||||| || | | |||||||| ||||| | || ||| | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 159031 ACTATGGTTACAAGTTCGGACAAGAAGA----AGAAACATATAATATCGTCGCA 159080 || ||||||||||||||| ||||| || |||||| || || ||||| ||| Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGCA 3088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552456107304640