Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq7 111 5e-19 seq28 100 9e-16 >seq7 Length=421595 Score = 111 bits (122), Expect = 5e-19 Identities = 304/457 (67%), Gaps = 9/457 (2%) Strand=Plus/Plus Query 256137 ACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAATCC 256196 |||| |||||||||||| | ||||||||||||| ||||| |||| | || || | Sbjct 314160 ACGGCGTGCGCAACTCGCTGCTGCTGGCGCCCATGCCCACCGCATCCACCTCCCAGATTC 314219 Query 256197 TGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTCGCT 256256 |||||||| || || | || ||| || ||||| ||| | ||||||||| | | Sbjct 314220 TGGGTAACAACGAGTGCTTTGAGCCCTACACCTCCAACATCTACGTGCGCCGCGTGCTGT 314279 Query 256257 CCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTCGGTCTGT 256316 | ||||||||| | || ||||||||| || || || ||||| || || | || |||| Sbjct 314280 CGGGCGAGTTCACGGTCGTGAACCAGCACCTGCTGCACGACCTGTACCGCATGGGCCTGT 314339 Query 256317 GGAACGAGAAGATGCAACAACG-CATAATTCGGGCCCGTGGGTCGGTGCAGAACATTGAG 256375 ||||| |||| ||| |||| | | |||| ||||| || ||| | || Sbjct 314340 GGAACCCTGAGAT-CAAGAACGAGCTGGTGGCGGCCAACGGGTCAGTCCAGGCTCTGGA- 314397 Query 256376 CGCTTGCC-GTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCAACGATT 256434 | | || | | || ||||| | ||| ||||| |||||||| ||| || | Sbjct 314398 --CATCCCTGATGAGC-TGCGCTCCCTGTACAAGACGGTGTGGGAGATCAAGCAGCGTGT 314454 Query 256435 GTTGGTCGACTTGTGCGCAGCACGACAACCGTTTGTGGATCAGTCGCAAAGCCTCAACCT 256494 | |||| ||| || ||| | || | || | || ||| || ||||| | Sbjct 314455 GCTGGTGGACATGGCCGCGGATCGTGGGGCCTTCATCGACCAGAGCCAGTCGTTCAACGT 314514 Query 256495 CTACTTTCCGGTGCCCAACTT-TAAACGCTTGACCAACGCACACTTTTACGGGTGGCGAA 256553 | | | |||| |||||||| | || | || | ||||||||||| |||| | Sbjct 314515 GTTCATGCCGGACCCCAACTTCGGCAAGC-TCACGTCCCTACACTTTTACGCGTGGAAGA 314573 Query 256554 ACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCG 256590 | ||||| ||||| |||||||||||||||||||| || Sbjct 314574 AGGGCCTCAAGACCGGCATGTACTACCTGCGCACACG 314610 >seq28 Length=264079 Score = 100 bits (110), Expect = 9e-16 Identities = 123/167 (74%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 443706 GAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTC 443765 ||||| ||||| || ||||||| || || || | || ||| |||| ||| || || Sbjct 66580 GAGCGCCTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTTCTGC-TC 66522 Query 443766 CATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGAT 443825 |||||||||| | || |||||||| || |||| ||| ||||||||| ||||| || || Sbjct 66521 CATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCAT 66462 Query 443826 CAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 | || |||||||| |||| |||||| || || || || |||| Sbjct 66461 CTCCCGTGACGAGGGCCTGCACACCGACTTTGCATGCCTGCTGTACA 66415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588284452044185